CN185582

Overview
NameCN185582
Unique NameCN185582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27B_YEAST (40S ribosomal protein S27-B OS=Saccharomyces cerevisiae GN=RPS27B PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.263e-20
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = -2
Query:  159 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 389
            DLL+P A         K LVQ P S+F+DVKC GC NITTVFSH+QT V C +C +VL  PTGG+A+L+EG SFRRK
Sbjct:    6 DLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTPTGGKAKLSEGTSFRRK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27A_YEAST (40S ribosomal protein S27-A OS=Saccharomyces cerevisiae GN=RPS27A PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.179e-20
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = -2
Query:  159 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 389
            DLL+P A         K LVQ P S+F+DVKC GC NITTVFSH+QT V C +C ++L  PTGG+A+L+EG SFRRK
Sbjct:    6 DLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKLSEGTSFRRK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27_ENTHI (40S ribosomal protein S27 OS=Entamoeba histolytica GN=RPS27 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.351e-14
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = -2
Query:  159 DIDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 395
            ++DLLNP A         KRLV +PNS+F+++KC  C   TT FSH+   ++C  C   L QPTGG+ +LT+ C FR K
Sbjct:    5 EVDLLNPTAASEAKAHKMKRLVPTPNSYFLEIKCPKCGATTTTFSHAHRQILCQKCGQPLGQPTGGKLKLTQQCKFRIK 83          
The following BLAST results are available for this feature:
BLAST of CN185582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS27B_YEAST6.263e-2059.7440S ribosomal protein S27-B OS=Saccharomyces cerev... [more]
RS27A_YEAST8.179e-2058.4440S ribosomal protein S27-A OS=Saccharomyces cerev... [more]
RS27_ENTHI1.351e-1445.5740S ribosomal protein S27 OS=Entamoeba histolytica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185582 ID=CN185582; Name=CN185582; organism=Citrus sinensis; type=EST; length=450bp
CCCCCGCAAAATTCACTTAGAATATAATCTTTCAAACATAAGATCAACCA
CACCATCCCTTTATATCAAAATTAATACATCATAACAAAAGAGGAAAAAG
GGGGAAAAAAGAAAGGATGTGACAAAATTCTTCCATCATTTAGTAGCACT
TAGTCACCCTTTCTCCGGAAAGAACATCCCTCAGTGAGTCTGGCACGTCC
ACCAGTGGGCTGGCGTAGAACGGACTGGCAGTTGCCACAAACCACCACAG
TTTGAGAGTGGCTGAAAACAGTTGTTATGTTGAAGCAACCCTGACATTTC
ACATCCATGAAAAAGGAATTGGGTGACTGAACAAGACGCTTAAGCTTGTG
CTTCTTCTTCTCAAGCTCAGCCGGAGGATTCAACAAATCAATATCATTTT
GGAGAACCGTGTTTGCAAATGCTCCGGGAGAACCTAGAAAACCCTAGCCT
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