CN185577

Overview
NameCN185577
Unique NameCN185577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185577_ssr91 microsatellite CN185577_ssr91:91..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2493 contig Csv1_Contig2493:1..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_BUCAI (6-phosphogluconate dehydrogenase, decarboxylating OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gnd PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.564e-21
Identity = 48/114 (42.11%), Postives = 79/114 (69.30%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M +++IG+ G+AVMG+NLALNI  K + +S++NRT S  +E   + K++  +P +  +D   F+ S+ KPR I+++V++G   D+TIK +  Y+EK D +ID GN +Y++T RR
Sbjct:    1 MSRQQIGVVGMAVMGRNLALNIESKNYSVSIFNRTRSVTEEVFNQNKKKNIVPYFSIKD---FIDSLLKPRCILLMVQSGKATDETIKMILPYLEKEDILIDAGNTFYKDTIRR 111          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_DICDI (6-phosphogluconate dehydrogenase, decarboxylating OS=Dictyostelium discoideum GN=gnd PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.042e-21
Identity = 56/110 (50.91%), Postives = 74/110 (67.27%), Query Frame = 2
Query:  320 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-RAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            IGL GLAVMG+NL LN+  +GF  SVYNRTTSKVDE V+ R K +      G    E+ V S++ PR ++++VKAG  VD  I+ L   +EKGD +IDGGN  Y +++RR
Sbjct:    8 IGLIGLAVMGENLVLNMESRGFTCSVYNRTTSKVDEFVQGRGKGK---KFIGCHSLETLVQSLKTPRRVMLMVKAGEVVDHFIQLLLPLLEKGDIIIDGGNSLYTDSDRR 114          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_BACSU (6-phosphogluconate dehydrogenase, decarboxylating OS=Bacillus subtilis GN=gntZ PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.042e-21
Identity = 50/109 (45.87%), Postives = 71/109 (65.14%), Query Frame = 2
Query:  320 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            IG+ GL VMG N+ALN+A KG  ++VYN T    D+ +++   +   P Y   D   FV S++KPR I ++V AG PVD  I++L   +E+GD ++DGGN  YE+TERR
Sbjct:    5 IGVIGLGVMGSNIALNMANKGENVAVYNYTRDLTDQLIQKLDGQSLSPYYELED---FVQSLEKPRKIFLMVTAGKPVDSVIQSLKPLLEEGDVIMDGGNSHYEDTERR 110          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD2_YEAST (6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Saccharomyces cerevisiae GN=GND2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.042e-21
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 2
Query:  320 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            +GL GLAVMGQNL LN A+ GF +  YNRT SKVD  +  A +     + G    E  V  ++KPR I++L+KAG PVD  IK L  +++KGD +IDGGN  + +T RR
Sbjct:    8 LGLVGLAVMGQNLILNAADHGFTVVAYNRTQSKVDRFL--ANEAKGKSIIGATSIEDLVAKLKKPRKIMLLIKAGAPVDTLIKELVPHLDKGDIIIDGGNSHFPDTNRR 114          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_KLEPN (6-phosphogluconate dehydrogenase, decarboxylating OS=Klebsiella pneumoniae GN=gnd PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.483e-21
Identity = 48/114 (42.11%), Postives = 78/114 (68.42%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M +++IG+ G+AVMG+NLALNI  +G+ +SV+NR+  K +E +     +  +P Y  ++   FV S++ PR I+++VKAG   D  I +L  Y++KGD +IDGGN ++++T RR
Sbjct:    1 MSKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENTGKKLVPYYTVQE---FVESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRR 111          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD9_ECOLX (6-phosphogluconate dehydrogenase, decarboxylating OS=Escherichia coli GN=gnd PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.483e-21
Identity = 48/114 (42.11%), Postives = 78/114 (68.42%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M +++IG+ G+AVMG+NLALNI  +G+ +SV+NR+  K +E +     +  +P Y  ++   FV S++ PR I+++VKAG   D  I +L  Y++KGD +IDGGN ++++T RR
Sbjct:    1 MSKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQE---FVESLETPRRILLMVKAGSGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRR 111          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_HAEIN (6-phosphogluconate dehydrogenase, decarboxylating OS=Haemophilus influenzae GN=gnd PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.549e-21
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 2
Query:  308 VQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            V+  IG+ GLAVMGQNL LN+ + GF +  YNRTTSKVDE ++ A +  N  + G    E     ++KPR ++++V+AG  VDQ I+ L  ++E+GD +IDGGN  Y +T RR
Sbjct:    3 VKGDIGVIGLAVMGQNLILNMNDHGFKVVAYNRTTSKVDEFLQGAAKGTN--IIGAYSLEDLAAKLEKPRKVMLMVRAGDVVDQFIEALLPHLEEGDIIIDGGNSNYPDTNRR 113          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_ECOLI (6-phosphogluconate dehydrogenase, decarboxylating OS=Escherichia coli (strain K12) GN=gnd PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.549e-21
Identity = 47/114 (41.23%), Postives = 78/114 (68.42%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M +++IG+ G+AVMG+NLALNI  +G+ +S++NR+  K +E +     +  +P Y  ++   FV S++ PR I+++VKAG   D  I +L  Y++KGD +IDGGN ++++T RR
Sbjct:    1 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKE---FVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRR 111          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_BACLI (6-phosphogluconate dehydrogenase, decarboxylating OS=Bacillus licheniformis GN=gntZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.549e-21
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 2
Query:  308 VQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            ++  IG+ GL VMG N+ALN+A KG  ++VYN T    D+ V++   +   P Y   D   FV S++KPR I ++V AG PVD  I +L   +E+GD ++DGGN  YE+TERR
Sbjct:    1 MRNTIGVIGLGVMGSNIALNMASKGEQVAVYNYTRDLTDQLVQKTGGQTVKPYYELED---FVQSLEKPRKIFLMVTAGKPVDSVIDSLVPLLEEGDVIMDGGNSHYEDTERR 110          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_STAES (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gnd PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.942e-21
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 2
Query:  314 RRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            ++IG+ GLAVMG+NLA NI  +G+ +SVYNR+  K DE V+ +      P Y     E FV S++KPR I+++VKAGP  D TI  L   ++  D +IDGGN  Y++T RR
Sbjct:    3 QQIGVVGLAVMGKNLAWNIESRGYSVSVYNRSRQKTDEMVKESPGREIYPTYSL---EEFVESLEKPRKILLMVKAGPATDATIDGLLPLLDDDDILIDGGNTNYQDTIRR 110          
The following BLAST results are available for this feature:
BLAST of CN185577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
6PGD_BUCAI1.564e-2142.116-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_DICDI2.042e-2150.916-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_BACSU2.042e-2145.876-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD2_YEAST2.042e-2148.626-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_KLEPN3.483e-2142.116-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD9_ECOLX3.483e-2142.116-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_HAEIN4.549e-2146.906-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_ECOLI4.549e-2141.236-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_BACLI4.549e-2145.136-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAES5.942e-2146.856-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185577 ID=CN185577; Name=CN185577; organism=Citrus sinensis; type=EST; length=648bp
CGTATGAGAACCAAAAAGTTGGCGTATGGGTTGGATTTTGTCCTCTGAGT
CAGAGATCAACTACCGAAGCCACGAAGAGAAACTAAGACAAATAATAATA
ATAAAAGGTTAAAAACAATCCGCAGAGTTTGACCTGTACATTTACAACAA
CTAACAAGGGCTTAAGAGCCAGGCCAATTAATAAATAGACTACATTCAAT
CAAATTGTTTTTTTTTTTCGCAAAACCCAGATGCTCAAATTTCCTAAAGT
CAGTTCATTTTCAAGCATTCTTCGCAGGGTTGAATTTTTCTCAGGTGACT
AAAGATGGTCCAGAGAAGAATTGGCCTAGCTGGCCTTGCTGTCATGGGTC
AAAATCTTGCCCTCAACATTGCTGAGAAAGGATTCCCAATTTCTGTTTAC
AATCGGACGACCTCTAAAGTTGACGAGACTGTTGAACGAGCCAAACAAGA
AGGGAATCTGCCCTTATATGGTTTCCGTGATCCTGAATCCTTTGTTCATT
CAATCCAGAAACCTCGTGTTATAATCATGCTTGTTAAAGCTGGTCCTCCT
GTTGATCAAACAATTAAAACATTGTCTGTTTACATGGAGAAAGGAGATTG
TGTCATTGATGGTGGTAATGAATGGTATGAGAATACCGAGAGGAGACA
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