CN185577

Overview
NameCN185577
Unique NameCN185577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185577_ssr91 microsatellite CN185577_ssr91:91..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2493 contig Csv1_Contig2493:1..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAM (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gnd PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.729e-20
Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = 2
Query:  314 RRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            ++IG+ GLAVMG+NLA NI   G+ +SV+NR++ K D  VE +K +   P Y     E FV+S++KPR I+++V+AG   D TI +L   ++ GD +IDGGN  Y++T RR
Sbjct:    3 QQIGVIGLAVMGKNLAWNIESHGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSL---EEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRR 110          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD1_YEAST (6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Saccharomyces cerevisiae GN=GND1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.949e-20
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 2
Query:  323 GLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            GL GLAVMGQNL LN A+ GF +  YNRT SKVD  +  A +     + G    E F+  +++PR +++LVKAG PVD  I  +   +EKGD +IDGGN  + ++ RR
Sbjct:    6 GLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFL--ANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRR 111          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_RAT (6-phosphogluconate dehydrogenase, decarboxylating OS=Rattus norvegicus GN=Pgd PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.580e-20
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M Q  I L GLAVMGQNL LN+ + GF +  +NRT SKVD+ +  AK+     + G +  +  V  ++KPR +I+LVKAG  VD  I+ L   ++ GD +IDGGN  Y +T RR
Sbjct:    1 MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--AKEAKGTKVIGAKSLKDMVSKLKKPRRVILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRR 112          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_HAEDU (6-phosphogluconate dehydrogenase, decarboxylating OS=Haemophilus ducreyi GN=gnd PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.121e-19
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  320 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            IG+ GLAVMGQNL LN+ + GF +  YNRT SKVDE +    ++ N+   G    E     ++KPR I+++V+AG  VDQ I  L  ++E GD +IDGGN  Y +T RR
Sbjct:    7 IGVIGLAVMGQNLILNMNDNGFKVVAYNRTASKVDEFLAGEAKDTNI--IGAYSLEDLAAKLEKPRKIMLMVRAGEVVDQFIDALLPHLEAGDIIIDGGNSNYPDTNRR 113          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_SHEEP (6-phosphogluconate dehydrogenase, decarboxylating OS=Ovis aries GN=PGD PE=1 SV=4)

HSP 1 Score: 95.1301 bits (235), Expect = 3.260e-19
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M Q  I L GLAVMGQNL LN+ + GF +  +NRT SKVD+ +  A +     + G    E  V  ++KPR II+LVKAG  VD  I+ L   ++ GD +IDGGN  Y +T RR
Sbjct:    1 MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRR 112          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_HUMAN (6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.260e-19
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M Q  I L GLAVMGQNL LN+ + GF +  +NRT SKVD+ +  A +     + G +  +  V  ++KPR II+LVKAG  VD  I+ L   ++ GD +IDGGN  Y +T RR
Sbjct:    1 MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRR 112          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_MOUSE (6-phosphogluconate dehydrogenase, decarboxylating OS=Mus musculus GN=Pgd PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.258e-19
Identity = 51/114 (44.74%), Postives = 70/114 (61.40%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M Q  I L GLAVMGQNL LN+ + GF +  +NRT SKVD+ +  A +     + G +  +  V  ++KPR +I+LVKAG  VD  I+ L   ++ GD +IDGGN  Y +T RR
Sbjct:    1 MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVVGAQSLKDMVSKLKKPRRVILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRR 112          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_DROME (6-phosphogluconate dehydrogenase, decarboxylating OS=Drosophila melanogaster GN=Pgd PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.486e-19
Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 2
Query:  311 QRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            Q  I L GLAVMGQNL LN+ EKGF +  YNRT +KV E +  A +  +  + G    E  V  ++ PR +++LVKAG  VD  I+ L   +  GD +IDGGN  Y++T RR
Sbjct:    4 QADIALIGLAVMGQNLILNMDEKGFVVCAYNRTVAKVKEFL--ANEAKDTKVIGADSLEDMVSKLKSPRKVMLLVKAGSAVDDFIQQLVPLLSAGDVIIDGGNSEYQDTSRR 113          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_CUNEL (6-phosphogluconate dehydrogenase, decarboxylating OS=Cunninghamella elegans GN=6-PGD PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.618e-18
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  320 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            IGL GLAVMGQNL LN+ + GF +  YNRTTSKVD+ +  A +     + G    E     +++PR +++LVKAG  VD  I  L  ++E+GD +IDGGN  + ++ RR
Sbjct:    8 IGLIGLAVMGQNLILNMNDHGFVVCAYNRTTSKVDDFL--ANEAKGTNVVGAHSVEELCAKLKRPRKVMLLVKAGSAVDAFIDQLLPHLEEGDIIIDGGNSHFPDSIRR 114          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_BUCBP (6-phosphogluconate dehydrogenase, decarboxylating OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gnd PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.113e-18
Identity = 43/114 (37.72%), Postives = 74/114 (64.91%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M +++IG+ G+AVMG+NLALN+    + +S++NR+    ++ +     +   P +  +D   FV S+  PR I++++K+G   D TIK+L  Y+ KGD +IDGGN +Y++T +R
Sbjct:    1 MAKQQIGVIGMAVMGRNLALNMERNQYTVSIFNRSLDITEKIILNNPNKNLFPFFSIKD---FVLSLIVPRCIVLMIKSGVATDDTIKSLIPYLSKGDIIIDGGNTFYKDTIQR 111          
The following BLAST results are available for this feature:
BLAST of CN185577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
6PGD_STAAM1.729e-2045.956-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD1_YEAST2.949e-2046.306-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_RAT8.580e-2045.616-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_HAEDU1.121e-1946.796-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SHEEP3.260e-1946.496-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_HUMAN3.260e-1945.616-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_MOUSE4.258e-1944.746-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_DROME9.486e-1945.546-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CUNEL1.618e-1844.956-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_BUCBP2.113e-1837.726-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185577 ID=CN185577; Name=CN185577; organism=Citrus sinensis; type=EST; length=648bp
CGTATGAGAACCAAAAAGTTGGCGTATGGGTTGGATTTTGTCCTCTGAGT
CAGAGATCAACTACCGAAGCCACGAAGAGAAACTAAGACAAATAATAATA
ATAAAAGGTTAAAAACAATCCGCAGAGTTTGACCTGTACATTTACAACAA
CTAACAAGGGCTTAAGAGCCAGGCCAATTAATAAATAGACTACATTCAAT
CAAATTGTTTTTTTTTTTCGCAAAACCCAGATGCTCAAATTTCCTAAAGT
CAGTTCATTTTCAAGCATTCTTCGCAGGGTTGAATTTTTCTCAGGTGACT
AAAGATGGTCCAGAGAAGAATTGGCCTAGCTGGCCTTGCTGTCATGGGTC
AAAATCTTGCCCTCAACATTGCTGAGAAAGGATTCCCAATTTCTGTTTAC
AATCGGACGACCTCTAAAGTTGACGAGACTGTTGAACGAGCCAAACAAGA
AGGGAATCTGCCCTTATATGGTTTCCGTGATCCTGAATCCTTTGTTCATT
CAATCCAGAAACCTCGTGTTATAATCATGCTTGTTAAAGCTGGTCCTCCT
GTTGATCAAACAATTAAAACATTGTCTGTTTACATGGAGAAAGGAGATTG
TGTCATTGATGGTGGTAATGAATGGTATGAGAATACCGAGAGGAGACA
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