CN185577

Overview
NameCN185577
Unique NameCN185577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185577_ssr91 microsatellite CN185577_ssr91:91..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2493 contig Csv1_Contig2493:1..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_CAEEL (6-phosphogluconate dehydrogenase, decarboxylating OS=Caenorhabditis elegans GN=T25B9.9 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.031e-18
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 2
Query:  305 MVQRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            M +  I + GLAVMGQNL LN+ + GF +  +NRT   VD+ +  A +     + G    E     +++PR ++ML+KAG PVD  I  +  ++E+GD +IDGGN  Y ++ RR
Sbjct:    1 MAEADIAVIGLAVMGQNLILNMNDHGFTVCAFNRTVKLVDDFL--ANEAKGTKIIGAHSIEEMCKKLKRPRRVMMLIKAGTPVDMMIDAIVPHLEEGDIIIDGGNSEYTDSNRR 112          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_ESCVU (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Escherichia vulneris GN=gnd PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.049e-17
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  338 AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            AVMG+NLALNI  +G+ +SV+NR+  K +E V     +  +P Y  ++   FV S++ PR I+++V+AG   D  I +L  Y++KGD +IDGGN ++ +T RR
Sbjct:    1 AVMGRNLALNIESRGYTVSVFNRSREKTEEVVAENPGKKLVPYYTVQE---FVESLETPRRILLMVQAGAGTDAAINSLKPYLDKGDIIIDGGNTFFHDTIRR 100          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_DROSI (6-phosphogluconate dehydrogenase, decarboxylating OS=Drosophila simulans GN=Pgd PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.370e-17
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  311 QRRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            Q  I L GLAVMGQNL LN+ EKGF +  YNRT +KV E +  A +     + G    +  V  ++ PR +++LVK G  VD  I+ L   +  GD +IDGGN  Y++T RR
Sbjct:    4 QADIALIGLAVMGQNLILNMDEKGFVVCAYNRTVAKVKEFL--ANEAKGTNVIGADSLKDMVSKLKSPRKVMLLVKGGSAVDDFIQQLVPLLSAGDVIIDGGNSEYQDTSRR 113          
BLAST of CN185577 vs. ExPASy Swiss-Prot
Match: 6PGD_TREPA (6-phosphogluconate dehydrogenase, decarboxylating OS=Treponema pallidum GN=gnd PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.789e-17
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  320 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFRDPESFVHSIQKPRVIIMLVKAGPPVDQTIKTLSVYMEKGDCVIDGGNEWYENTERR 646
            IG  GLAVMG+NL LNI   GF ++V+NRTT+ VD  +  A +     + G       V  + +PR I+++VKAG  VD  I  +   +EKGD VIDGGN  Y++T RR
Sbjct:    5 IGFIGLAVMGENLVLNIERNGFSVAVFNRTTTVVDRFL--AGRAHGKRITGAHSIAELVSLLARPRKIMLMVKAGSAVDAVIDQILPLLEKGDLVIDGGNSHYQDTIRR 111          
The following BLAST results are available for this feature:
BLAST of CN185577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
6PGD_CAEEL8.031e-1839.476-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_ESCVU1.049e-1742.726-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_DROSI1.370e-1743.756-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_TREPA1.789e-1744.956-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185577 ID=CN185577; Name=CN185577; organism=Citrus sinensis; type=EST; length=648bp
CGTATGAGAACCAAAAAGTTGGCGTATGGGTTGGATTTTGTCCTCTGAGT
CAGAGATCAACTACCGAAGCCACGAAGAGAAACTAAGACAAATAATAATA
ATAAAAGGTTAAAAACAATCCGCAGAGTTTGACCTGTACATTTACAACAA
CTAACAAGGGCTTAAGAGCCAGGCCAATTAATAAATAGACTACATTCAAT
CAAATTGTTTTTTTTTTTCGCAAAACCCAGATGCTCAAATTTCCTAAAGT
CAGTTCATTTTCAAGCATTCTTCGCAGGGTTGAATTTTTCTCAGGTGACT
AAAGATGGTCCAGAGAAGAATTGGCCTAGCTGGCCTTGCTGTCATGGGTC
AAAATCTTGCCCTCAACATTGCTGAGAAAGGATTCCCAATTTCTGTTTAC
AATCGGACGACCTCTAAAGTTGACGAGACTGTTGAACGAGCCAAACAAGA
AGGGAATCTGCCCTTATATGGTTTCCGTGATCCTGAATCCTTTGTTCATT
CAATCCAGAAACCTCGTGTTATAATCATGCTTGTTAAAGCTGGTCCTCCT
GTTGATCAAACAATTAAAACATTGTCTGTTTACATGGAGAAAGGAGATTG
TGTCATTGATGGTGGTAATGAATGGTATGAGAATACCGAGAGGAGACA
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