CN185566

Overview
NameCN185566
Unique NameCN185566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2492 contig Csv1_Contig2492:1..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_ANAVT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.591e-53
Identity = 93/163 (57.06%), Postives = 122/163 (74.85%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D K F+  L  S+NYNR+GFGH+ E    +  EY S +I+++++  +    G+V ++LA+++GFCWGVERAV +AYE RK FP E+IWITNEIIHNP+VN+R++EM V  IPVE G K F VV   DVV+LPAFGA+V+EM  L+ K  +IVDTTCPWVSKVW
Sbjct:    2 DTKTFKRTLQHSENYNRKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWITNEIIHNPSVNQRMQEMQVGFIPVEAGNKDFSVVGNNDVVILPAFGASVQEMQLLSEKGCKIVDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_ANASP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena sp. (strain PCC 7120) GN=ispH PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.591e-53
Identity = 93/163 (57.06%), Postives = 122/163 (74.85%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D K F+  L  S+NYNR+GFGH+ E    +  EY S +I+++++  +    G+V ++LA+++GFCWGVERAV +AYE RK FP E+IWITNEIIHNP+VN+R++EM V  IPVE G K F VV   DVV+LPAFGA+V+EM  L+ K  +IVDTTCPWVSKVW
Sbjct:    2 DTKTFKRTLQHSENYNRKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWITNEIIHNPSVNQRMQEMQVGFIPVEAGNKDFSVVGNNDVVILPAFGASVQEMQLLSEKGCKIVDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_SYNSC (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9605) GN=ispH PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.538e-53
Identity = 95/163 (58.28%), Postives = 117/163 (71.78%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG+    G + V+LAE++GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN  L EM VQ IPVE+G K F  V  GDVV+LPAFGA V+EM  LN +   IVDTTCPWVSKVW
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAESLEQAYQSGLIGTIRDNGYRLEHGRLNVRLAEAFGFCWGVERAVAMAYETRKHYPSERLWITNEIIHNPSVNDHLREMDVQFIPVEQGVKDFSGVTSGDVVILPAFGATVQEMQLLNERGCHIVDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.286e-52
Identity = 95/164 (57.93%), Postives = 127/164 (77.44%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV-EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D K F+ +L  S+ Y+R+GFGH+ E  E++  EY S +I++++ENG  +  G V ++LAE++GFCWGVERAV +AYE R+ FP E+IWITNEIIHNP+VN+ L EM V+ IPV E+G+K F VV   DVV+LPAFGA+V+EM  LN+K  +I+DTTCPWVSKVW
Sbjct:    2 DTKAFKRSLHSSNQYHRKGFGHEAEVTEMLRFEYQSSLIQQIRENGNRFQRGEVTIQLAEAFGFCWGVERAVALAYETRQHFPTERIWITNEIIHNPSVNQNLREMQVEFIPVDEQGQKDFSVVAGEDVVILPAFGASVQEMQLLNDKGCKIMDTTCPWVSKVW 165          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_NOSP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispH PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.679e-52
Identity = 91/163 (55.83%), Postives = 125/163 (76.69%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D K F+ +L  S+NYNR+GFGH+ E    +  EY S++I+++++  +    G+V ++LA+++GFCWGVERAV +AYE R+ FP E IWITNEIIHNP+VN+R++EM V+ IP+E   K F VV  GDVV+LPAFGA+V+EM  L++K  +IVDTTCPWVSKVW
Sbjct:    2 DTKAFKRSLQHSENYNRKGFGHQAEVATQLQSEYQSNLIQEIRDRNYILQRGDVTIRLAQAFGFCWGVERAVAMAYETRQHFPTEHIWITNEIIHNPSVNQRMQEMEVEFIPIEGKNKDFSVVGTGDVVILPAFGASVQEMQILHDKGCKIVDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9902) GN=ispH PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.193e-52
Identity = 95/163 (58.28%), Postives = 117/163 (71.78%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG++ T G + V LAE++GFCWGVERAV +AYE R+ +P E++WITNEIIHNP+VN  L EM V  IPVEEG K F  V  GDVV+LPAFGA V+EM  LN +   IVDTTCPWVSKVW
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAENLEQAYQSGLIGTIRDNGYKLTHGRLNVHLAEAFGFCWGVERAVAMAYETRRHYPSERLWITNEIIHNPSVNDHLREMDVLFIPVEEGVKDFSGVTSGDVVILPAFGATVQEMQLLNERGCHIVDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPW (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH7803) GN=ispH PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.193e-52
Identity = 94/163 (57.67%), Postives = 116/163 (71.17%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D   F+ +L  SD YNRRGFG  EE    + Q Y S +I  +++NG+    G ++V+LA+ +GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN  L EM VQ IPVE+G K F  V  GDVV+LPAFGA V+EM  LN +   IVDTTCPWVSKVW
Sbjct:    2 DTHAFKRSLHHSDRYNRRGFGRAEEVAGSLEQAYQSSLIGSIRDNGYRLNHGRLQVRLAKDFGFCWGVERAVAMAYETRKHYPSERLWITNEIIHNPSVNDHLREMNVQFIPVEQGVKDFSGVTSGDVVILPAFGATVQEMQLLNERGCHIVDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP8 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 8801) GN=ispH PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.193e-52
Identity = 89/163 (54.60%), Postives = 126/163 (77.30%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D K F+ +L +S+NY+R+GFG  E  + +MN EY S +I+++++N +++  GNV + LA+++GFCWGVERAV +AYE R+ FP+E IWITNE+IH+P+VN+RLE+M ++ I V  G+K F  +  GDVV+LPAFGA+V EM  LN++   IVDTTCPWVSKVW
Sbjct:    2 DTKAFKRSLQQSENYHRKGFGQTEAAMGVMNTEYQSSLIQQIRQNNYQWKQGNVTIHLAQAFGFCWGVERAVAMAYETRQHFPKESIWITNELIHHPSVNQRLEQMEIKFIEVINGQKDFSQIKSGDVVILPAFGASVSEMQLLNDRGCTIVDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9311) GN=ispH PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.334e-52
Identity = 95/164 (57.93%), Postives = 117/164 (71.34%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWT 741
            D   F+ +L  SD YNRRGFG  +E    + Q Y S +I  +++NG+  T G +KV+LAE++GFCWGVERAV +AYE R+ +P+E+IWITNEIIHNP+VN  L EM V  I VE G K F  V  GDVV+LPAFGA V+EM  LN +   IVDTTCPWVSKVWT
Sbjct:    2 DTHAFKRSLHHSDRYNRRGFGRADEVAGSLEQAYQSSLIGSIRDNGYSLTHGRLKVRLAEAFGFCWGVERAVAMAYETRRHYPQERIWITNEIIHNPSVNDHLREMDVLFISVEGGVKDFSGVATGDVVILPAFGATVQEMQLLNERGCHIVDTTCPWVSKVWT 165          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_TRIEI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=ispH PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.402e-51
Identity = 88/163 (53.99%), Postives = 123/163 (75.46%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D K F   L +S+NYNR+GFGH +E   LM   Y S++I++++EN +    G V +KLA+++GFCWGVER+V +AYE R+ FP ++IWI+ E+IHNP+VN+ +++M ++ IPV +G+K F V    DVV+LPAFGA+V+EM  L +KN QIVDTTCPWVSKVW
Sbjct:    2 DTKAFTRALKKSENYNRQGFGHAQEVATLMQSAYKSNLIQQIRENNYTLQRGEVTIKLAKTFGFCWGVERSVAMAYETRQHFPNQQIWISYELIHNPSVNQDMKDMEIKFIPVIDGQKDFSVAGNNDVVILPAFGASVQEMQILKDKNCQIVDTTCPWVSKVW 164          
The following BLAST results are available for this feature:
BLAST of CN185566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
ISPH_ANAVT2.591e-5357.064-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANASP2.591e-5357.064-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNSC7.538e-5358.284-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP41.286e-5257.934-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NOSP71.679e-5255.834-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS92.193e-5258.284-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPW2.193e-5257.674-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP82.193e-5254.604-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS38.334e-5257.934-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_TRIEI5.402e-5153.994-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185566 ID=CN185566; Name=CN185566; organism=Citrus sinensis; type=EST; length=743bp
AGTCATAGTTCATTCTCAGACTCCACGCCGTCCGCTAACTTTTGCGCCGT
CTCTTTCTCGCTGAATCCGTGAATCTCCCTCATCATGGCGACGACTCTGC
AATTCTGCCGTGTTTGCGCGCGAACTGACATAGGTTCGCGCAGTAATAAT
CGCTCCGGAGCGCTGGCTCCGCCGCGCCGGAGGCCTGTGATCGTCAGGTG
CTCCGGTGAAAAATCGCCGAGCTCGGCGGCGGCTATTGGTGCCGAATTTG
ACGCGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATTACAATCGG
AGAGGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAATCAGGAGTA
CACAAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGAGTATACTT
GGGGAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTTGCTGGGGA
GTTGAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAGTTTCCTGA
GGAGAAGATCTGGATTACCAATGAAATCATACACAATCCAACTGTTAATA
AGCGGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGGAAGGAAAG
AAGCAATTTGATGTGGTAAATAAGGGTGATGTTGTGGTTTTGCCTGCATT
TGGGGCTGCAGTTGAAGAAATGGTGACTCTGAATAACAAGAATGTACAGA
TTGTTGATACAACTTGCCCTTGGGTGTCTAAGGTCTGGACTTC
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