CN185566

Overview
NameCN185566
Unique NameCN185566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_PROMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus GN=ispH PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.124e-47
Identity = 86/163 (52.76%), Postives = 114/163 (69.94%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D + F+ +L  SD YNRRGF    +  + + + Y S++I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L  M V+ I  E+G K F  V +GDVV+LPAFGA V EM  L+ +   I+DTTCPWVSKVW
Sbjct:    2 DTQAFKRSLHHSDRYNRRGFESPAKRAQALEKAYQSNLIASIRDNGYLLEHGRLRVKLAEAFGFCWGVERAVAMAYETRRHYPTESIWITNEIIHNPSVNDHLRNMNVRFISAEKGIKDFSSVEEGDVVILPAFGATVHEMKLLHERGCHIIDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_SYNY3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=ispH PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.396e-44
Identity = 81/135 (60.00%), Postives = 105/135 (77.78%), Query Frame = 1
Query:  334 LMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            +MN EY S +I+++++N +    G+V + LAE++GFCWGVERAV +AYE R+ FP +++WITNEIIHNP+VN+RL EM V  I V  G+K F  V KGDVV+LPAFGA+VEEM  LN++   IVDTTCPWVSKVW
Sbjct:    3 VMNTEYQSHLIQEIRQNNYRLERGDVTILLAEAFGFCWGVERAVAMAYETRQHFPGDRLWITNEIIHNPSVNQRLREMEVNFIDVVNGEKDFSGVAKGDVVILPAFGASVEEMQLLNDRECTIVDTTCPWVSKVW 137          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_GLOVI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gloeobacter violaceus GN=ispH PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.558e-40
Identity = 77/157 (49.04%), Postives = 107/157 (68.15%), Query Frame = 1
Query:  280 RSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEG----KKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            +S NY R+GFG K E  + +  EY S +I +++ NG+    G V V+LAE++GFCWGV++AV +AYE  + F   ++WITNEIIHNP VN+ L  M ++ +  +E      K F+ V++ DVV+LPAFGA+ +EM  L+ KN  IVDTTCPWVS VW
Sbjct:    2 QSKNYFRKGFGLKAEVQDDLKAEYESSLIHEIRANGYTLRRGGVTVRLAEAFGFCWGVDKAVSMAYETHRMFAGRQLWITNEIIHNPLVNQHLRAMGIRFLDEDESGRRVPKDFERVSEKDVVILPAFGASTQEMQILDEKNCVIVDTTCPWVSAVW 158          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_THETN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter tengcongensis GN=ispH PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 44/109 (40.37%), Postives = 69/109 (63.30%), Query Frame = 1
Query:  409 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKV 735
            +++ +AE  GFC+GV+RA++IAYE   +  + +++   EIIHNP V K LEE  V+ I  EE +K    + KGD +++ + G + +    L  K V+I+D TCP+V KV
Sbjct:    1 MEILIAEHAGFCFGVKRAIEIAYEELNKQKDTRLYTLGEIIHNPQVVKDLEEKGVRVIEEEELEK----LLKGDRLIIRSHGISKKLYEFLEQKGVEIIDVTCPFVKKV 105          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_THEPX (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter sp. (strain X514) GN=ispH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  409 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKV 735
            +K+ +AE  GFC+GV+RA++ AY+  ++   +KI+   EIIHNP V   L +  V  I  EE     D + +GD +++ + G + +    L  K V+++D TCP+V KV
Sbjct:    1 MKILIAEYAGFCFGVKRAIETAYQEIEKGDGKKIYTLGEIIHNPQVISDLSKKGVNVIEEEE----LDKLTEGDKLIIRSHGVSKKLYDFLAKKGVEVIDVTCPFVKKV 105          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_THEP3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ispH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  409 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKV 735
            +K+ +AE  GFC+GV+RA++ AY+  ++   +KI+   EIIHNP V   L +  V  I  EE     D + +GD +++ + G + +    L  K V+++D TCP+V KV
Sbjct:    1 MKILIAEYAGFCFGVKRAIETAYQEIEKGDGKKIYTLGEIIHNPQVISDLSKKGVNVIEEEE----LDKLTEGDKLIIRSHGVSKKLYDFLAKKGVEVIDVTCPFVKKV 105          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_GEOSM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Geobacter sp. (strain M21) GN=ispH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.423e-13
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = 1
Query:  409 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSK 732
            ++V LA+  GFC+GV+RA Q+A+EA     E   +    IIH+P V +RLEEM V  IPVE+  +    V  G  +++ + G A EE+      N+++VD TCP+V K
Sbjct:    1 MQVILAKHAGFCFGVKRATQLAFEAADTGSET--YTLGPIIHSPQVVQRLEEMGV--IPVEDVSE----VETGGTIIIRSHGVAAEELEAAVRANLEVVDATCPFVKK 100          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_PELCD (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ispH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.699e-12
Identity = 40/108 (37.04%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  409 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSK 732
            +K+ LA+S GFC+GV+RA  +A++A +QF  E I     IIH+P V K+LEE  ++ I      ++ + ++ G  V++ + G   EE+  ++++ ++IVD TCP+V K
Sbjct:    1 MKIILADSAGFCFGVKRATNLAFDAAEQF--EHICSLGPIIHSPQVVKKLEEKGIKVI------RKVEDIDHG-AVIIRSHGITAEELDIIHDRELKIVDATCPFVKK 99          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_PELPD (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pelobacter propionicus (strain DSM 2379) GN=ispH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 1
Query:  409 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSK 732
            ++V LA+  GFC+GV+RA Q+A+EA     ++K +    IIH+P V K+LEEM V+ +      K  D ++ G  +++ + G A  E+     K ++IVD TCP+V K
Sbjct:    1 MRVILAKRAGFCFGVKRATQMAFEAAGM--DKKTYTLGPIIHSPQVVKKLEEMGVRAL------KDLDSMDSG-TIIIRSHGVASHEIAEAMQKKLEIVDATCPFVKK 99          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_CLOTE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium tetani GN=ispH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 34/109 (31.19%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  409 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKV 735
            + + LA+  GFC+GV+RAV    + ++ +P++ I+    +IHN  V   L+   + +I    G +  D + +GD+++L + G  +E +  L  K + I+D TCP+VS +
Sbjct:    1 MSIILAKKSGFCYGVKRAVDTCLKIKQNYPDKIIYTLGPLIHNNDVVDFLKTKNIFSI----GYENIDTLKEGDIIILRSHGVTLETIQKLKEKKLNIIDATCPYVSNI 105          
The following BLAST results are available for this feature:
BLAST of CN185566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
ISPH_PROMA2.124e-4752.764-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNY36.396e-4460.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GLOVI9.558e-4049.044-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THETN2.144e-1540.374-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEPX2.621e-1336.704-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEP32.621e-1336.704-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GEOSM3.423e-1340.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PELCD1.699e-1237.044-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PELPD2.898e-1237.964-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CLOTE2.898e-1231.194-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185566 ID=CN185566; Name=CN185566; organism=Citrus sinensis; type=EST; length=743bp
AGTCATAGTTCATTCTCAGACTCCACGCCGTCCGCTAACTTTTGCGCCGT
CTCTTTCTCGCTGAATCCGTGAATCTCCCTCATCATGGCGACGACTCTGC
AATTCTGCCGTGTTTGCGCGCGAACTGACATAGGTTCGCGCAGTAATAAT
CGCTCCGGAGCGCTGGCTCCGCCGCGCCGGAGGCCTGTGATCGTCAGGTG
CTCCGGTGAAAAATCGCCGAGCTCGGCGGCGGCTATTGGTGCCGAATTTG
ACGCGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATTACAATCGG
AGAGGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAATCAGGAGTA
CACAAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGAGTATACTT
GGGGAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTTGCTGGGGA
GTTGAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAGTTTCCTGA
GGAGAAGATCTGGATTACCAATGAAATCATACACAATCCAACTGTTAATA
AGCGGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGGAAGGAAAG
AAGCAATTTGATGTGGTAAATAAGGGTGATGTTGTGGTTTTGCCTGCATT
TGGGGCTGCAGTTGAAGAAATGGTGACTCTGAATAACAAGAATGTACAGA
TTGTTGATACAACTTGCCCTTGGGTGTCTAAGGTCTGGACTTC
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