CN185566

Overview
NameCN185566
Unique NameCN185566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_GEOBB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=ispH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  409 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSK 732
            ++V LA+  GFC+GV+RA Q+A++A     E   +    IIH+P V +RLEEM V  IPV+   +    V  G  +++ + G A EE+      N+++VD TCP+V K
Sbjct:    1 MQVILAKHAGFCFGVKRATQLAFQAANIGSET--YTLGPIIHSPQVVQRLEEMGV--IPVDNVSE----VETGGTIIIRSHGVAAEELEAAVRANLEVVDATCPFVKK 100          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_CLOAB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium acetobutylicum GN=ispH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 38/108 (35.19%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  412 KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKV 735
            KV LAE  GFC+GV+RAV +A   +K++  +KI+   E+IHN  V  +L++  V  I +E+     D + + DV+++ + G + E    L +K + +++ TCP+V+K+
Sbjct:    3 KVMLAEKAGFCFGVKRAVDMALLTQKEY-NKKIYTLGELIHNNDVVDKLKDNNVYPIGIED----IDNLKENDVILIRSHGISEEIYKILLSKGLTVINATCPFVTKI 105          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_GEOLS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=ispH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 1
Query:  409 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSK 732
            +KV LA+  GFC+GV+RA Q+A+EA  +  ++K +    IIH+P V  +LEEM V  +      K    V+ G  V++ + G    EM   + K +++VD TCP+V K
Sbjct:    1 MKVILAKRAGFCFGVKRATQMAFEAAGK--DQKTFTLGPIIHSPQVVNKLEEMGVGVV------KDLSGVSNG-TVIIRSHGVLASEMDEAHQKQLEVVDATCPFVKK 99          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_AQUAE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Aquifex aeolicus GN=ispH PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  409 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKV 735
            V + +AE  GFC+GV+RAV++A E+ K+  + K++    IIHNP    RL+ + V     EE K+       GD V++ + G   E+   L  K ++++D TCP+V  V
Sbjct:    2 VDIIIAEHAGFCFGVKRAVKLAEESLKE-SQGKVYTLGPIIHNPQEVNRLKNLGVFPSQGEEFKE-------GDTVIIRSHGIPPEKEEALRKKGLKVIDATCPYVKAV 102          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_GEOMG (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = 1
Query:  409 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSK 732
            +++ LA+  GFC+GV+RA Q+A+EA ++  E K +    IIH+P V  RLEEM V+ +      K    +  G ++V  + G   EE+     K +++VD TCP+V K
Sbjct:    1 MEIILAKRAGFCFGVKRATQMAFEAAEK--EGKTYSLGPIIHSPQVVHRLEEMGVKVL------KGLGEITDGTIIV-RSHGVTSEELEEAVRKELEVVDATCPFVKK 99          
The following BLAST results are available for this feature:
BLAST of CN185566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
ISPH_GEOBB3.785e-1238.894-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CLOAB1.438e-1135.194-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GEOLS1.878e-1137.964-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_AQUAE4.185e-1135.784-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GEOMG9.322e-1137.044-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185566 ID=CN185566; Name=CN185566; organism=Citrus sinensis; type=EST; length=743bp
AGTCATAGTTCATTCTCAGACTCCACGCCGTCCGCTAACTTTTGCGCCGT
CTCTTTCTCGCTGAATCCGTGAATCTCCCTCATCATGGCGACGACTCTGC
AATTCTGCCGTGTTTGCGCGCGAACTGACATAGGTTCGCGCAGTAATAAT
CGCTCCGGAGCGCTGGCTCCGCCGCGCCGGAGGCCTGTGATCGTCAGGTG
CTCCGGTGAAAAATCGCCGAGCTCGGCGGCGGCTATTGGTGCCGAATTTG
ACGCGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATTACAATCGG
AGAGGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAATCAGGAGTA
CACAAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGAGTATACTT
GGGGAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTTGCTGGGGA
GTTGAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAGTTTCCTGA
GGAGAAGATCTGGATTACCAATGAAATCATACACAATCCAACTGTTAATA
AGCGGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGGAAGGAAAG
AAGCAATTTGATGTGGTAAATAAGGGTGATGTTGTGGTTTTGCCTGCATT
TGGGGCTGCAGTTGAAGAAATGGTGACTCTGAATAACAAGAATGTACAGA
TTGTTGATACAACTTGCCCTTGGGTGTCTAAGGTCTGGACTTC
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