CN185553
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_CHICK (Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21 Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1 Query: 301 MGLRSPLL---FSKGELFPSARDVRSFSRL----------SLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 MGLR LL ++ G PSA R+ ++ GK ++ L + + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L G V GTPGRVFDM+RR+SLR IK Sbjct: 44 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 183 HSP 2 Score: 96.6709 bits (239), Expect = 1.224e-19 Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 3 Query: 216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 +F TS + +V +FD MGLRE+LLRGIYAYGFEKPSAIQQR I KGR+VI Q+QSGTGKTATF +LQ LD Sbjct: 28 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD 102
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_BOVIN (Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2 SV=3) HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21 Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1 Query: 301 MGLRSPLL---FSKGELFPSARDVRSFSRL----------SLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 MGLR LL ++ G PSA R+ ++ GK ++ L + + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L G V GTPGRVFDM+RR+SLR IK Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 182 HSP 2 Score: 96.6709 bits (239), Expect = 1.224e-19 Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 3 Query: 216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 +F TS + +V +FD MGLRE+LLRGIYAYGFEKPSAIQQR I KGR+VI Q+QSGTGKTATF +LQ LD Sbjct: 27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD 101
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 5.517e-21 Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 3 Query: 252 FDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGLVQV 455 F+ GLR LL GIY GFE+PS IQ++ I GR+++ +A++GTGKTA+F L +++ L + Sbjct: 38 FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHI 105 HSP 2 Score: 60.8474 bits (146), Expect = 5.517e-21 Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1 Query: 445 LSKCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDM 645 LS QAL+L PTRELA Q +V + LG ++ ++V GGT++R+D LQ V + VGTPGR+ D+ Sbjct: 102 LSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDL 169
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNV (ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 5.519e-21 Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 3 Query: 252 FDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGLVQV 455 F+ GLR LL GIY GFE+PS IQ++ I GR+++ +A++GTGKTA+F L +++ L + Sbjct: 38 FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHI 105 HSP 2 Score: 60.8474 bits (146), Expect = 5.519e-21 Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1 Query: 445 LSKCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDM 645 LS QAL+L PTRELA Q +V + LG ++ ++V GGT++R+D LQ V + VGTPGR+ D+ Sbjct: 102 LSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDL 169
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2) HSP 1 Score: 63.929 bits (154), Expect = 5.536e-21 Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 Query: 457 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654 Q ++L PTRELA Q +V + LG YL ++V GGTS+++D L V + VGTPGR+ D+ R+ Sbjct: 217 QVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRK 282 HSP 2 Score: 58.151 bits (139), Expect = 5.536e-21 Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 3 Query: 246 DSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 + F+ L+ LL GIY GFE+PS IQ+ I G +++ +A++GTGKTA FC L+++D Sbjct: 147 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKID 210
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 5.559e-21 Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1 Query: 457 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654 Q L+L PTRELA Q +V + LG Y+ V+V A GGTS+++D L V + V TPGRV D+ ++ Sbjct: 119 QVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLDLAQK 184 HSP 2 Score: 58.9214 bits (141), Expect = 5.559e-21 Identity = 31/85 (36.47%), Postives = 51/85 (60.00%), Query Frame = 3 Query: 183 QMNELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 Q ++ +T+G DF D + L+ +LLRGI+ G+ KPS IQ++ I GR+++ +A++GTGKTA+F L++ D Sbjct: 39 QTEDVTATEGNDF-----------DDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEKTD 112
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_MOUSE (Eukaryotic initiation factor 4A-III OS=Mus musculus GN=Eif4a3 PE=2 SV=3) HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21 Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1 Query: 301 MGLRSPLL---FSKGELFPSARDVRSFSRL----------SLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 MGLR LL ++ G PSA R+ ++ GK ++ L + + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L G V GTPGRVFDM+RR+SLR IK Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 182 HSP 2 Score: 96.6709 bits (239), Expect = 1.224e-19 Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 3 Query: 216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 +F TS + +V +FD MGLRE+LLRGIYAYGFEKPSAIQQR I KGR+VI Q+QSGTGKTATF +LQ LD Sbjct: 27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLD 101
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.905e-20 Identity = 54/122 (44.26%), Postives = 72/122 (59.02%), Query Frame = 1 Query: 316 PLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 P + + P R ++ GK ++ ++ L + QALVL+PTRELA QI+ V+ ALGDYL V+ HAC+GGTSV ED R L G + GTPGRV+DM+RR+ LR IK Sbjct: 47 PSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIRRRHLRTKNIK 168 HSP 2 Score: 97.4413 bits (241), Expect = 7.177e-20 Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 3 Query: 237 EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 +V +FDAMGL+E+LLRGIYAY FEKPSAIQQR I+P +GR+VI QAQSGTGKTATF +LQ +D Sbjct: 21 KVATTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSID 87
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 2.061e-20 Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1 Query: 445 LSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDM 645 +SK QAL+L PTRELA Q +V + LG +LG+ V GGT +++D L V + VGTPGR+ D+ Sbjct: 115 ISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRILDL 181 HSP 2 Score: 53.1434 bits (126), Expect = 2.061e-20 Identity = 30/97 (30.93%), Postives = 52/97 (53.61%), Query Frame = 3 Query: 147 EGSQFDARQYDTQMNELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 EG + A+ Q ++ +T G +F + ++ L+ GI+ GFEKPS IQ+ I GR+++ +A++GTGKTA F L++++ Sbjct: 27 EGLKAPAKDARPQTEDVTATKGLEFEDFF-----------IKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVN 112
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_COCIM (ATP-dependent RNA helicase DHH1 OS=Coccidioides immitis GN=DHH1 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.682e-20 Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1 Query: 445 LSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDM 645 +SK QAL+L PTRELA Q +V + LG +LG+ V GGT +++D L V + VGTPGR+ D+ Sbjct: 113 ISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLSDTVHIIVGTPGRILDL 179 HSP 2 Score: 53.1434 bits (126), Expect = 2.682e-20 Identity = 30/89 (33.71%), Postives = 50/89 (56.18%), Query Frame = 3 Query: 177 DTQMNELLSTDGQDFFTSYDEVYDS----FDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQ 431 +T+ E L +D T ++V + F+ ++ L+ GI+ GFEKPS IQ+ I GR+++ +A++GTGKTA F L++ Sbjct: 20 ETKWKEQLKLPPKDTRTQTEDVTATKGLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108 The following BLAST results are available for this feature:
BLAST of CN185553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 478
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185553 ID=CN185553; Name=CN185553; organism=Citrus sinensis; type=EST; length=682bpback to top |