CN185553

Overview
NameCN185553
Unique NameCN185553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_CHICK (Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  301 MGLRSPLL---FSKGELFPSARDVRSFSRL----------SLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            MGLR  LL   ++ G   PSA   R+  ++              GK    ++     L + + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L  G  V  GTPGRVFDM+RR+SLR   IK
Sbjct:   44 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 183          

HSP 2 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            +F TS + +V  +FD MGLRE+LLRGIYAYGFEKPSAIQQR I    KGR+VI Q+QSGTGKTATF   +LQ LD
Sbjct:   28 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD 102          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_BOVIN (Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  301 MGLRSPLL---FSKGELFPSARDVRSFSRL----------SLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            MGLR  LL   ++ G   PSA   R+  ++              GK    ++     L + + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L  G  V  GTPGRVFDM+RR+SLR   IK
Sbjct:   43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 182          

HSP 2 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            +F TS + +V  +FD MGLRE+LLRGIYAYGFEKPSAIQQR I    KGR+VI Q+QSGTGKTATF   +LQ LD
Sbjct:   27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD 101          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 5.517e-21
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 3
Query:  252 FDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGLVQV 455
            F+  GLR  LL GIY  GFE+PS IQ++ I     GR+++ +A++GTGKTA+F    L +++  L  +
Sbjct:   38 FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHI 105          

HSP 2 Score: 60.8474 bits (146), Expect = 5.517e-21
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  445 LSKCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDM 645
            LS  QAL+L PTRELA Q  +V + LG ++  ++V    GGT++R+D   LQ  V + VGTPGR+ D+
Sbjct:  102 LSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDL 169          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNV (ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 5.519e-21
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 3
Query:  252 FDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGLVQV 455
            F+  GLR  LL GIY  GFE+PS IQ++ I     GR+++ +A++GTGKTA+F    L +++  L  +
Sbjct:   38 FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHI 105          

HSP 2 Score: 60.8474 bits (146), Expect = 5.519e-21
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  445 LSKCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDM 645
            LS  QAL+L PTRELA Q  +V + LG ++  ++V    GGT++R+D   LQ  V + VGTPGR+ D+
Sbjct:  102 LSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDL 169          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 5.536e-21
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  457 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654
            Q ++L PTRELA Q  +V + LG YL ++V    GGTS+++D   L   V + VGTPGR+ D+ R+
Sbjct:  217 QVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRK 282          

HSP 2 Score: 58.151 bits (139), Expect = 5.536e-21
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  246 DSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            + F+   L+  LL GIY  GFE+PS IQ+  I     G +++ +A++GTGKTA FC   L+++D
Sbjct:  147 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKID 210          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.559e-21
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  457 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654
            Q L+L PTRELA Q  +V + LG Y+ V+V A  GGTS+++D   L   V + V TPGRV D+ ++
Sbjct:  119 QVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLDLAQK 184          

HSP 2 Score: 58.9214 bits (141), Expect = 5.559e-21
Identity = 31/85 (36.47%), Postives = 51/85 (60.00%), Query Frame = 3
Query:  183 QMNELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            Q  ++ +T+G DF           D + L+ +LLRGI+  G+ KPS IQ++ I     GR+++ +A++GTGKTA+F    L++ D
Sbjct:   39 QTEDVTATEGNDF-----------DDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEKTD 112          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_MOUSE (Eukaryotic initiation factor 4A-III OS=Mus musculus GN=Eif4a3 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  301 MGLRSPLL---FSKGELFPSARDVRSFSRL----------SLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            MGLR  LL   ++ G   PSA   R+  ++              GK    ++     L + + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L  G  V  GTPGRVFDM+RR+SLR   IK
Sbjct:   43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 182          

HSP 2 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            +F TS + +V  +FD MGLRE+LLRGIYAYGFEKPSAIQQR I    KGR+VI Q+QSGTGKTATF   +LQ LD
Sbjct:   27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLD 101          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.905e-20
Identity = 54/122 (44.26%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  316 PLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            P    +  + P  R     ++     GK    ++    ++   L + QALVL+PTRELA QI+ V+ ALGDYL V+ HAC+GGTSV ED R L  G  +  GTPGRV+DM+RR+ LR   IK
Sbjct:   47 PSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIRRRHLRTKNIK 168          

HSP 2 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 3
Query:  237 EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            +V  +FDAMGL+E+LLRGIYAY FEKPSAIQQR I+P  +GR+VI QAQSGTGKTATF   +LQ +D
Sbjct:   21 KVATTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSID 87          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.061e-20
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  445 LSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDM 645
            +SK QAL+L PTRELA Q  +V + LG +LG+ V    GGT +++D   L   V + VGTPGR+ D+
Sbjct:  115 ISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRILDL 181          

HSP 2 Score: 53.1434 bits (126), Expect = 2.061e-20
Identity = 30/97 (30.93%), Postives = 52/97 (53.61%), Query Frame = 3
Query:  147 EGSQFDARQYDTQMNELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            EG +  A+    Q  ++ +T G +F   +           ++  L+ GI+  GFEKPS IQ+  I     GR+++ +A++GTGKTA F    L++++
Sbjct:   27 EGLKAPAKDARPQTEDVTATKGLEFEDFF-----------IKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVN 112          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_COCIM (ATP-dependent RNA helicase DHH1 OS=Coccidioides immitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.682e-20
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  445 LSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDM 645
            +SK QAL+L PTRELA Q  +V + LG +LG+ V    GGT +++D   L   V + VGTPGR+ D+
Sbjct:  113 ISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLSDTVHIIVGTPGRILDL 179          

HSP 2 Score: 53.1434 bits (126), Expect = 2.682e-20
Identity = 30/89 (33.71%), Postives = 50/89 (56.18%), Query Frame = 3
Query:  177 DTQMNELLSTDGQDFFTSYDEVYDS----FDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQ 431
            +T+  E L    +D  T  ++V  +    F+   ++  L+ GI+  GFEKPS IQ+  I     GR+++ +A++GTGKTA F    L++
Sbjct:   20 ETKWKEQLKLPPKDTRTQTEDVTATKGLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108          
The following BLAST results are available for this feature:
BLAST of CN185553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
IF4A3_CHICK5.014e-2145.00Eukaryotic initiation factor 4A-III OS=Gallus gall... [more]
IF4A3_BOVIN5.014e-2145.00Eukaryotic initiation factor 4A-III OS=Bos taurus ... [more]
DHH1_CRYNE5.517e-2142.65ATP-dependent RNA helicase DHH1 OS=Cryptococcus ne... [more]
DHH1_CRYNV5.519e-2142.65ATP-dependent RNA helicase VAD1 OS=Cryptococcus ne... [more]
RH12_ORYSJ5.536e-2145.45DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]
DDX6_DICDI5.559e-2146.97Probable ATP-dependent RNA helicase ddx6 OS=Dictyo... [more]
IF4A3_MOUSE6.549e-2145.00Eukaryotic initiation factor 4A-III OS=Mus musculu... [more]
FAL1_USTMA1.905e-2044.26ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
DHH1_PHANO2.061e-2047.76ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria n... [more]
DHH1_COCIM2.682e-2047.76ATP-dependent RNA helicase DHH1 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185553 ID=CN185553; Name=CN185553; organism=Citrus sinensis; type=EST; length=682bp
GCAGGCCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAGATCAAT
CTTCTCCTTCTCTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGATTT
TAATCGCCAGCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCCAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCGGGAAAACCTTTTGAGGGGAATCTATGCCT
ATGGGTTTGAGAAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACGTGAGGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AAGTGTCAGGCCCTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGAT
TGAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATG
CTTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCT
GGTGTTCAGGTTGCTGTTGGCACTCCGGGTCGTGTGTTTGACATGCTGCG
CCGACAGTCTTTACGCCCTGATTACATTAAGA
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