CN185553

Overview
NameCN185553
Unique NameCN185553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.841e-23
Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = 1
Query:  304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            G   P    +  + P  +     ++     GK    ++     +   L  CQAL+LAPTRELAQQI+KV+ A+GD++ ++ HAC+GG SVRED + LQ G QV VGTPGRV DM++R+ L+ D++K
Sbjct:   44 GFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHMK 169          

HSP 2 Score: 103.605 bits (257), Expect = 1.001e-21
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 3
Query:  225 TSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGL 446
            ++YDE+ DSFDAM LR  LLRG+YAYGFE+PSAIQQR I+P  KG +VI QAQSGTGKTATF    LQ++D  L
Sbjct:   18 SNYDEITDSFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNL 91          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 1
Query:  304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            G   P    +  + P  +     ++     GK    ++     L   +  CQAL+LAPTRELAQQI+KV+ A+GD++ ++ HAC+GGT+VRED + LQ G QV VGTPGRV DM++R+ LR D +K
Sbjct:   44 GFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRVLRTDNLK 169          

HSP 2 Score: 102.064 bits (253), Expect = 2.914e-21
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 3
Query:  225 TSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            ++YDE+ DSFD+M L+  LLRGIYAYGFE+PSAIQQR I+P  KG +VI QAQSGTGKTATF    LQ+LD
Sbjct:   18 SNYDEITDSFDSMELKPELLRGIYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLD 88          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 1
Query:  304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            G   P    +  + P  +     ++     GK    ++     L   +  CQAL+LAPTRELAQQI+KV+ A+GD++ ++ HAC+GGT+VRED + LQ G QV VGTPGRV DM++R+ LR D +K
Sbjct:   44 GFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRVLRTDNLK 169          

HSP 2 Score: 103.219 bits (256), Expect = 1.308e-21
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 3
Query:  225 TSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            ++YDE+ DSFDAM L+  LLRG+YAYGFE+PSAIQQR I+P  KG +VI QAQSGTGKTATF    LQ+LD
Sbjct:   18 SNYDEITDSFDAMDLKPELLRGVYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLD 88          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 1
Query:  304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            G   P    +  + P  +     ++     GK    ++     +   L  CQAL+LAPTRELAQQI+KV+ A+GD++ ++ HAC+GGT+VRED + LQ G QV VGTPGRV DM++R+ LR D +K
Sbjct:   44 GFERPSAIQQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQKIDPNLKACQALILAPTRELAQQIQKVVVAIGDFMSLECHACIGGTNVREDMKALQDGPQVVVGTPGRVQDMIQRRVLRTDQMK 169          

HSP 2 Score: 101.679 bits (252), Expect = 3.806e-21
Identity = 49/74 (66.22%), Postives = 59/74 (79.73%), Query Frame = 3
Query:  225 TSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGL 446
            ++YDE+ DSFD+M L+  LLRGIYAYGFE+PSAIQQR I+P  KG +VI QAQSGTGKTATF    LQ++D  L
Sbjct:   18 SNYDEITDSFDSMDLKPELLRGIYAYGFERPSAIQQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQKIDPNL 91          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = 1
Query:  304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            G   P    +  + P  +     ++     GK    ++     +   +  CQAL+LAPTRELAQQI+KV+ A+GD++ V  HAC+GGTSVR+D + LQ G QV VGTPGRV DM++R+ L+ D++K
Sbjct:   42 GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDVACHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHMK 167          

HSP 2 Score: 101.293 bits (251), Expect = 4.970e-21
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 3
Query:  225 TSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            ++YDE  DSFDAM L+  LLRG+YAYGFE+PSAIQQR I+P  KG +VI QAQSGTGKTATF    LQ++D
Sbjct:   16 SNYDETTDSFDAMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQKID 86          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_MAGGR (ATP-dependent RNA helicase eIF4A OS=Magnaporthe grisea GN=TIF1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 53/126 (42.06%), Postives = 79/126 (62.70%), Query Frame = 1
Query:  304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            G   P    +  + P  +     ++     GK    ++     +   + +CQAL+LAPTRELAQQI+KV+ A+GD++ ++ HAC+GGTSVR+D + LQ G QV VGTPGRV DM++R+ L+ D +K
Sbjct:   42 GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDTNVKQCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDGMK 167          

HSP 2 Score: 102.834 bits (255), Expect = 1.708e-21
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  225 TSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGLVQ 452
            ++YDE  DSFD M L+  LLRGIYAYGFE+PSAIQQR I+P  KG +VI QAQSGTGKTATF   +LQ++D  + Q
Sbjct:   16 SNYDETVDSFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDTNVKQ 91          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_CHAGB (ATP-dependent RNA helicase DHH1 OS=Chaetomium globosum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.859e-23
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 1
Query:  445 LSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQ 657
            +SK Q L+L PTRELA Q  +V + LG +LG+ V    GGT +R+D   LQ  V + VGTPGR+ D+  +Q
Sbjct:   77 VSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILDLAGKQ 147          

HSP 2 Score: 58.151 bits (139), Expect = 4.859e-23
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  252 FDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            F+  GL+ +LL GI+  GFEKPS IQ+  I     GR+++ +A++GTGKTA F    L++++
Sbjct:   13 FEDFGLKRDLLMGIFEAGFEKPSPIQEESIPVALVGRDILARAKNGTGKTAAFVIPALEKIN 74          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 1
Query:  304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            G   P    +  + P   +    ++     GK    ++     +   L +CQAL+LAPTRELAQQI+KV+ ALGD + V+ HAC+GGT VR+D   LQAGV V VGTPGRV DM++R++L  D ++
Sbjct:   38 GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQ 163          

HSP 2 Score: 100.908 bits (250), Expect = 6.491e-21
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  225 TSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGLVQ 452
            T+YDEV D+FD M L+  LLRGIYAYGFE+PSAIQQR I+P    R+V+ QAQSGTGKTATF   +LQ++D  L Q
Sbjct:   12 TNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQ 87          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A2_CHICK (Eukaryotic initiation factor 4A-II OS=Gallus gallus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 58/127 (45.67%), Postives = 76/127 (59.84%), Query Frame = 1
Query:  304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA-GVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            G   P    +  + P  +     ++     GK    A+     L + L + QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR + + LQA    + VGTPGRVFDML R+ L P +IK
Sbjct:   52 GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIK 178          

HSP 2 Score: 103.219 bits (256), Expect = 1.308e-21
Identity = 50/74 (67.57%), Postives = 61/74 (82.43%), Query Frame = 3
Query:  225 TSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGL 446
            ++++E+ D+FD M L+E+LLRGIYAYGFEKPSAIQQR I+P  KG +VI QAQSGTGKTATF   ILQQL+  L
Sbjct:   26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIDL 99          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.224e-23
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query:  445 LSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQ 657
            ++K QAL+L PTRELA Q  +V+R LG +LG++     GGTS+R+D   L   V V VGTPGRV D+  R+
Sbjct:   96 VNKIQALILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRLNDPVHVLVGTPGRVLDLASRK 166          

HSP 2 Score: 57.7658 bits (138), Expect = 8.224e-23
Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  171 QYDT--QMNELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQ 431
            Q DT  Q  ++L+T G+           +F+   L+  LL GI+  GFEKPS +Q+  I     GR+++ +A++GTGKTA+F    LQQ
Sbjct:   14 QKDTRPQTEDVLNTKGK-----------TFEDFPLKRELLMGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCLQQ 91          
The following BLAST results are available for this feature:
BLAST of CN185553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
IF4A_AJECN1.841e-2342.86ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
IF4A_NEOFI2.405e-2343.65ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
IF4A_ASPFU2.405e-2343.65ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
IF4A_ASPCL2.405e-2343.65ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]
IF4A_PHANO3.141e-2342.86ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]
IF4A_MAGGR3.141e-2342.06ATP-dependent RNA helicase eIF4A OS=Magnaporthe gr... [more]
DHH1_CHAGB4.859e-2347.89ATP-dependent RNA helicase DHH1 OS=Chaetomium glob... [more]
IF4A_SCHPO5.357e-2343.65ATP-dependent RNA helicase eIF4A OS=Schizosaccharo... [more]
IF4A2_CHICK5.357e-2345.67Eukaryotic initiation factor 4A-II OS=Gallus gallu... [more]
DHH1_DEBHA8.224e-2350.70ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001I07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185553 ID=CN185553; Name=CN185553; organism=Citrus sinensis; type=EST; length=682bp
GCAGGCCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAGATCAAT
CTTCTCCTTCTCTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGATTT
TAATCGCCAGCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCCAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCGGGAAAACCTTTTGAGGGGAATCTATGCCT
ATGGGTTTGAGAAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACGTGAGGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AAGTGTCAGGCCCTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGAT
TGAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATG
CTTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCT
GGTGTTCAGGTTGCTGTTGGCACTCCGGGTCGTGTGTTTGACATGCTGCG
CCGACAGTCTTTACGCCCTGATTACATTAAGA
back to top