CN185553
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RHLB_PSYIN (ATP-dependent RNA helicase rhlB OS=Psychromonas ingrahamii (strain 37) GN=rhlB PE=3 SV=1) HSP 1 Score: 48.9062 bits (115), Expect = 7.472e-11 Identity = 24/66 (36.36%), Postives = 37/66 (56.06%), Query Frame = 1 Query: 457 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654 +A++LAPTRELA QI K L +++ GG V + L+ GV + +GT GR D +++ Sbjct: 86 RAIILAPTRELAIQIHKDAMVLASMSNLRLGLAYGGEKVEIQRTKLEKGVDILIGTTGRTIDFVKQ 151 HSP 2 Score: 38.891 bits (89), Expect = 7.472e-11 Identity = 19/61 (31.15%), Postives = 33/61 (54.10%), Query Frame = 3 Query: 252 FDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQL 434 F + L ++L+ G+ + G+E + IQ + G+++ QAQ+GTGKT F + L Sbjct: 11 FADLPLEKSLISGLTSQGYEYCTPIQALSLPITLTGKDIAGQAQTGTGKTLAFLPAVFHHL 71
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: MAK5_PICGU (ATP-dependent RNA helicase MAK5 OS=Pichia guilliermondii GN=MAK5 PE=3 SV=1) HSP 1 Score: 46.2098 bits (108), Expect = 9.528e-11 Identity = 22/68 (32.35%), Postives = 39/68 (57.35%), Query Frame = 1 Query: 460 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACV---GGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654 A++ APTRELA Q+ M + + + + V GG S+++ +R+L G + V TPGR +++ + Sbjct: 262 AMIFAPTRELAHQVVDHMNKIAKFSPLAQNGIVSITGGLSIQKQERLLSHGPSILVATPGRCLELMEK 329 HSP 2 Score: 41.2022 bits (95), Expect = 9.528e-11 Identity = 20/61 (32.79%), Postives = 38/61 (62.30%), Query Frame = 3 Query: 249 SFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQ 431 S + + L + G+ GF++P+AIQ++ I +G++VI +A +G+GKT + IL++ Sbjct: 185 SMENVSLSTYTINGLAGCGFKEPTAIQRKAIPLALQGKDVIGKATTGSGKTLAYGIPILER 245
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DBP1_CANGA (ATP-dependent RNA helicase DBP1 OS=Candida glabrata GN=DBP1 PE=3 SV=1) HSP 1 Score: 47.3654 bits (111), Expect = 9.589e-11 Identity = 29/72 (40.28%), Postives = 38/72 (52.78%), Query Frame = 1 Query: 445 LSKC--QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654 + KC ALVLAPTRELA QI + VK + GG + + R + G + V TPGR+ D+L R Sbjct: 217 MRKCYPSALVLAPTRELAIQIFDEAKKYTYRSWVKPYVVYGGAPIGQQMRDMDRGCNLLVATPGRLNDLLER 288 HSP 2 Score: 40.0466 bits (92), Expect = 9.589e-11 Identity = 22/66 (33.33%), Postives = 34/66 (51.52%), Query Frame = 3 Query: 237 EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQL 434 E F + L E LL + F KP+ +Q+ I K R+++ AQ+G+GKT F +L +L Sbjct: 135 EAITEFKSPPLDELLLENVELANFSKPTPVQKYSIPIVTKNRDLMACAQTGSGKTGGFLFPVLSEL 200
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: PRP28_YARLI (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Yarrowia lipolytica GN=PRP28 PE=3 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 9.604e-11 Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1 Query: 463 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSL 663 L+LAPTRELA QI+ LG KV + VGG S +E +Q G ++ V TPGR+ D++ R+ L Sbjct: 243 LILAPTRELAMQIKDEAVKFCAPLGFKVVSVVGGYSAQEQALAVQEGAELIVATPGRLLDVIDRRLL 309 HSP 2 Score: 32.7278 bits (73), Expect = 9.604e-11 Identity = 17/37 (45.95%), Postives = 27/37 (72.97%), Query Frame = 3 Query: 303 GFEKPSAIQQRGIVPFCKG-REVIQQAQSGTGKTATF 410 G+++P+ IQ R +P G R+VI A++G+GKTA+F Sbjct: 182 GYKEPTPIQ-RAAIPIALGIRDVIGVAETGSGKTASF 217
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DBP2_LODEL (ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus GN=DBP2 PE=3 SV=1) HSP 1 Score: 45.8246 bits (107), Expect = 9.614e-11 Identity = 26/62 (41.94%), Postives = 33/62 (53.23%), Query Frame = 1 Query: 463 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDML 648 LVLAPTRELA QI+ G ++ GG R L GV++ + TPGR+ DML Sbjct: 193 LVLAPTRELACQIQTECSKFGASSRIRNTCVYGGAPKGPQIRDLANGVEICIATPGRLIDML 254 HSP 2 Score: 41.5874 bits (96), Expect = 9.614e-11 Identity = 20/55 (36.36%), Postives = 32/55 (58.18%), Query Frame = 3 Query: 249 SFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFC 413 SFD G + +L + GF KP+ IQ +G GR+++ A +G+GKT ++C Sbjct: 117 SFDEAGFPDYVLNELKNQGFPKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYC 171
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2) HSP 1 Score: 47.3654 bits (111), Expect = 9.618e-11 Identity = 29/72 (40.28%), Postives = 39/72 (54.17%), Query Frame = 1 Query: 442 VLSKCQA---LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDML 648 +L K QA L++APTRELA QI + + ALG + VK VGG + L + V +PGR+ D L Sbjct: 177 LLDKPQAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASPGRLLDHL 248 HSP 2 Score: 40.0466 bits (92), Expect = 9.618e-11 Identity = 22/62 (35.48%), Postives = 34/62 (54.84%), Query Frame = 3 Query: 249 SFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQL 434 +F +G+RE L G++ + IQ I G+++I A++G+GKTA F ILQ L Sbjct: 116 TFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQAL 177
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: HAS1_YEAST (ATP-dependent RNA helicase HAS1 OS=Saccharomyces cerevisiae GN=HAS1 PE=1 SV=1) HSP 1 Score: 46.595 bits (109), Expect = 9.641e-11 Identity = 24/63 (38.10%), Postives = 36/63 (57.14%), Query Frame = 1 Query: 463 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLR 651 +V+ PTRELA QI V R L ++ +GG + R++ L GV + + TPGR+ D L+ Sbjct: 118 IVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQ 180 HSP 2 Score: 40.817 bits (94), Expect = 9.641e-11 Identity = 19/55 (34.55%), Postives = 32/55 (58.18%), Query Frame = 3 Query: 246 DSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATF 410 + F+ + L + L+ I GF +++Q R I P GR+V+ A++G+GKT F Sbjct: 42 EKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAF 96
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RHLB_ERWT9 (ATP-dependent RNA helicase rhlB OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rhlB PE=3 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 9.690e-11 Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 1 Query: 457 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654 +AL+LAPTRELA QI L G+K+ GG + ++L+ GV V +GT GR+ D ++ Sbjct: 86 RALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLKVLENGVDVLIGTTGRLIDYAKQ 151 HSP 2 Score: 35.4242 bits (80), Expect = 9.690e-11 Identity = 19/61 (31.15%), Postives = 27/61 (44.26%), Query Frame = 3 Query: 252 FDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQL 434 F L ++ + GF + IQ + GR+V QAQ+GTGKT F + L Sbjct: 11 FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHL 71 The following BLAST results are available for this feature:
BLAST of CN185553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 478
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN185553 ID=CN185553; Name=CN185553; organism=Citrus sinensis; type=EST; length=682bpback to top |