CN185553

Overview
NameCN185553
Unique NameCN185553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:81..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RHLB_PSYIN (ATP-dependent RNA helicase rhlB OS=Psychromonas ingrahamii (strain 37) GN=rhlB PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 7.472e-11
Identity = 24/66 (36.36%), Postives = 37/66 (56.06%), Query Frame = 1
Query:  457 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654
            +A++LAPTRELA QI K    L     +++    GG  V   +  L+ GV + +GT GR  D +++
Sbjct:   86 RAIILAPTRELAIQIHKDAMVLASMSNLRLGLAYGGEKVEIQRTKLEKGVDILIGTTGRTIDFVKQ 151          

HSP 2 Score: 38.891 bits (89), Expect = 7.472e-11
Identity = 19/61 (31.15%), Postives = 33/61 (54.10%), Query Frame = 3
Query:  252 FDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQL 434
            F  + L ++L+ G+ + G+E  + IQ   +     G+++  QAQ+GTGKT  F   +   L
Sbjct:   11 FADLPLEKSLISGLTSQGYEYCTPIQALSLPITLTGKDIAGQAQTGTGKTLAFLPAVFHHL 71          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: MAK5_PICGU (ATP-dependent RNA helicase MAK5 OS=Pichia guilliermondii GN=MAK5 PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 9.528e-11
Identity = 22/68 (32.35%), Postives = 39/68 (57.35%), Query Frame = 1
Query:  460 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACV---GGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654
            A++ APTRELA Q+   M  +  +  +  +  V   GG S+++ +R+L  G  + V TPGR  +++ +
Sbjct:  262 AMIFAPTRELAHQVVDHMNKIAKFSPLAQNGIVSITGGLSIQKQERLLSHGPSILVATPGRCLELMEK 329          

HSP 2 Score: 41.2022 bits (95), Expect = 9.528e-11
Identity = 20/61 (32.79%), Postives = 38/61 (62.30%), Query Frame = 3
Query:  249 SFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQ 431
            S + + L    + G+   GF++P+AIQ++ I    +G++VI +A +G+GKT  +   IL++
Sbjct:  185 SMENVSLSTYTINGLAGCGFKEPTAIQRKAIPLALQGKDVIGKATTGSGKTLAYGIPILER 245          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DBP1_CANGA (ATP-dependent RNA helicase DBP1 OS=Candida glabrata GN=DBP1 PE=3 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 9.589e-11
Identity = 29/72 (40.28%), Postives = 38/72 (52.78%), Query Frame = 1
Query:  445 LSKC--QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654
            + KC   ALVLAPTRELA QI    +       VK +   GG  + +  R +  G  + V TPGR+ D+L R
Sbjct:  217 MRKCYPSALVLAPTRELAIQIFDEAKKYTYRSWVKPYVVYGGAPIGQQMRDMDRGCNLLVATPGRLNDLLER 288          

HSP 2 Score: 40.0466 bits (92), Expect = 9.589e-11
Identity = 22/66 (33.33%), Postives = 34/66 (51.52%), Query Frame = 3
Query:  237 EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQL 434
            E    F +  L E LL  +    F KP+ +Q+  I    K R+++  AQ+G+GKT  F   +L +L
Sbjct:  135 EAITEFKSPPLDELLLENVELANFSKPTPVQKYSIPIVTKNRDLMACAQTGSGKTGGFLFPVLSEL 200          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: PRP28_YARLI (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Yarrowia lipolytica GN=PRP28 PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 9.604e-11
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1
Query:  463 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSL 663
            L+LAPTRELA QI+         LG KV + VGG S +E    +Q G ++ V TPGR+ D++ R+ L
Sbjct:  243 LILAPTRELAMQIKDEAVKFCAPLGFKVVSVVGGYSAQEQALAVQEGAELIVATPGRLLDVIDRRLL 309          

HSP 2 Score: 32.7278 bits (73), Expect = 9.604e-11
Identity = 17/37 (45.95%), Postives = 27/37 (72.97%), Query Frame = 3
Query:  303 GFEKPSAIQQRGIVPFCKG-REVIQQAQSGTGKTATF 410
            G+++P+ IQ R  +P   G R+VI  A++G+GKTA+F
Sbjct:  182 GYKEPTPIQ-RAAIPIALGIRDVIGVAETGSGKTASF 217          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DBP2_LODEL (ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus GN=DBP2 PE=3 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 9.614e-11
Identity = 26/62 (41.94%), Postives = 33/62 (53.23%), Query Frame = 1
Query:  463 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDML 648
            LVLAPTRELA QI+      G    ++     GG       R L  GV++ + TPGR+ DML
Sbjct:  193 LVLAPTRELACQIQTECSKFGASSRIRNTCVYGGAPKGPQIRDLANGVEICIATPGRLIDML 254          

HSP 2 Score: 41.5874 bits (96), Expect = 9.614e-11
Identity = 20/55 (36.36%), Postives = 32/55 (58.18%), Query Frame = 3
Query:  249 SFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFC 413
            SFD  G  + +L  +   GF KP+ IQ +G      GR+++  A +G+GKT ++C
Sbjct:  117 SFDEAGFPDYVLNELKNQGFPKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYC 171          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2)

HSP 1 Score: 47.3654 bits (111), Expect = 9.618e-11
Identity = 29/72 (40.28%), Postives = 39/72 (54.17%), Query Frame = 1
Query:  442 VLSKCQA---LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDML 648
            +L K QA   L++APTRELA QI + + ALG  + VK    VGG  +      L     + V +PGR+ D L
Sbjct:  177 LLDKPQAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASPGRLLDHL 248          

HSP 2 Score: 40.0466 bits (92), Expect = 9.618e-11
Identity = 22/62 (35.48%), Postives = 34/62 (54.84%), Query Frame = 3
Query:  249 SFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQL 434
            +F  +G+RE L       G++  + IQ   I     G+++I  A++G+GKTA F   ILQ L
Sbjct:  116 TFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQAL 177          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: HAS1_YEAST (ATP-dependent RNA helicase HAS1 OS=Saccharomyces cerevisiae GN=HAS1 PE=1 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 9.641e-11
Identity = 24/63 (38.10%), Postives = 36/63 (57.14%), Query Frame = 1
Query:  463 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLR 651
            +V+ PTRELA QI  V R L ++        +GG + R++   L  GV + + TPGR+ D L+
Sbjct:  118 IVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQ 180          

HSP 2 Score: 40.817 bits (94), Expect = 9.641e-11
Identity = 19/55 (34.55%), Postives = 32/55 (58.18%), Query Frame = 3
Query:  246 DSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATF 410
            + F+ + L +  L+ I   GF   +++Q R I P   GR+V+  A++G+GKT  F
Sbjct:   42 EKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAF 96          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RHLB_ERWT9 (ATP-dependent RNA helicase rhlB OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rhlB PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 9.690e-11
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 1
Query:  457 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654
            +AL+LAPTRELA QI      L    G+K+    GG    +  ++L+ GV V +GT GR+ D  ++
Sbjct:   86 RALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLKVLENGVDVLIGTTGRLIDYAKQ 151          

HSP 2 Score: 35.4242 bits (80), Expect = 9.690e-11
Identity = 19/61 (31.15%), Postives = 27/61 (44.26%), Query Frame = 3
Query:  252 FDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQL 434
            F    L   ++  +   GF   + IQ   +     GR+V  QAQ+GTGKT  F +     L
Sbjct:   11 FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHL 71          
The following BLAST results are available for this feature:
BLAST of CN185553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
RHLB_PSYIN7.472e-1136.36ATP-dependent RNA helicase rhlB OS=Psychromonas in... [more]
MAK5_PICGU9.528e-1132.35ATP-dependent RNA helicase MAK5 OS=Pichia guillier... [more]
DBP1_CANGA9.589e-1140.28ATP-dependent RNA helicase DBP1 OS=Candida glabrat... [more]
PRP28_YARLI9.604e-1144.78Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DBP2_LODEL9.614e-1141.94ATP-dependent RNA helicase DBP2 OS=Lodderomyces el... [more]
RRP3_PHANO9.618e-1140.28ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria ... [more]
HAS1_YEAST9.641e-1138.10ATP-dependent RNA helicase HAS1 OS=Saccharomyces c... [more]
RHLB_ERWT99.690e-1139.39ATP-dependent RNA helicase rhlB OS=Erwinia tasmani... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185553 ID=CN185553; Name=CN185553; organism=Citrus sinensis; type=EST; length=682bp
GCAGGCCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAGATCAAT
CTTCTCCTTCTCTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGATTT
TAATCGCCAGCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCCAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCGGGAAAACCTTTTGAGGGGAATCTATGCCT
ATGGGTTTGAGAAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACGTGAGGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AAGTGTCAGGCCCTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGAT
TGAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATG
CTTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCT
GGTGTTCAGGTTGCTGTTGGCACTCCGGGTCGTGTGTTTGACATGCTGCG
CCGACAGTCTTTACGCCCTGATTACATTAAGA
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