CN185553
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 8.787e-22 Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 1 Query: 445 LSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQ 657 L+K QAL++ PTRELA Q +V+R LG + G+ GGT++R+D L V + VGTPGRV D+ R+ Sbjct: 112 LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK 182 HSP 2 Score: 56.6102 bits (135), Expect = 8.787e-22 Identity = 35/117 (29.91%), Postives = 58/117 (49.57%), Query Frame = 3 Query: 84 TLSLDFNRQHQSFADMAGLAPEGSQFDARQYDTQMNELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQL 434 +++ +FN + S D+ + Q +++L+T G F Y L+ LL GI+ GFEKPS IQ+ I GR+++ +A++GTGKTA F L+++ Sbjct: 3 SINNNFNTNNNSNTDLDRDWKTALNIPKKDTRPQTDDVLNTKGNTFEDFY-----------LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKV 108
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 8.789e-22 Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 Query: 457 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654 QA++L PTRELA Q +V + L YL ++V GGTS+R+D L V + VGTPGR+ D+ ++ Sbjct: 194 QAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKK 259 HSP 2 Score: 60.8474 bits (146), Expect = 8.789e-22 Identity = 27/64 (42.19%), Postives = 43/64 (67.19%), Query Frame = 3 Query: 246 DSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 + F+ L+ +LL+GIY GFEKPS IQ+ I G +++ +A++GTGKT FC +L+++D Sbjct: 124 NEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKID 187
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RH34_ORYSJ (DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica GN=Os03g0566800 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21 Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = 1 Query: 304 GLRSPLLFSKGELFP--SARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 G P + + P S RDV ++ GK + +L C + + + QAL+L+PTRELA Q E+VM A+GDY+ ++VHAC+GG S+ ED R L+ GV V GTPGRV DM++R++LR IK Sbjct: 50 GFEKPSAIQQRAVLPIISGRDV--IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIK 175 HSP 2 Score: 92.8189 bits (229), Expect = 1.768e-18 Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 3 Query: 237 EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGLVQV 455 EV SFD MG+RE+LLRGIYAYGFEKPSAIQQR ++P GR+VI QAQSGTGKT+ + Q +D + +V Sbjct: 28 EVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREV 100
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21 Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = 1 Query: 304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYI 678 G P + + P ++ GK ++ + + K QALVLAPTRELAQQI+KV+ ALGDYL V HACVGGT+VRED L G + VGTPGRVFDM+ R +L+ + + Sbjct: 47 GFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGTPGRVFDMINRGALKTEAV 171 HSP 2 Score: 98.2117 bits (243), Expect = 4.208e-20 Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 3 Query: 198 LSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 L DG ++++EV D+FD M L+ LLRGIYAYGFE+PSAIQQR I+P GR+ I QAQSGTGKTATF ILQ++D Sbjct: 12 LQIDGDLINSNWNEVVDNFDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRID 91
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21 Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 1 Query: 394 GKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 GK ++ + + QAL+LAPTRELAQQI+KV+ ALGDY+ + HAC+GGT+VRED L G QV VGTPGRV+DM+ R++ + D +K Sbjct: 87 GKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKIDCHACIGGTNVREDMAKLNEGAQVVVGTPGRVYDMINRRAFKTDQLK 182 HSP 2 Score: 97.8265 bits (242), Expect = 5.495e-20 Identity = 50/83 (60.24%), Postives = 62/83 (74.70%), Query Frame = 3 Query: 189 NELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 N L DG+ ++++ V D+FD M L+E LLRG+YAYGFE+PSAIQ R IVP KG +VI QAQSGTGKTATF ILQ++D Sbjct: 20 NNLNIADGE-IESNWETVIDNFDNMELKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQRID 101
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.487e-21 Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 1 Query: 445 LSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQ 657 L+K QAL++ PTRELA Q +V+R LG + G+ GGT++R+D L V + VGTPGRV D+ R+ Sbjct: 102 LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHILVGTPGRVLDLASRR 172 HSP 2 Score: 55.4546 bits (132), Expect = 1.487e-21 Identity = 33/96 (34.38%), Postives = 54/96 (56.25%), Query Frame = 3 Query: 153 SQFDARQYDT--QMNELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQL 434 +Q + + DT Q +++L+T G+ F Y L+ LL GI+ GFEKPS IQ+ I G++++ +A++GTGKTA F L+++ Sbjct: 14 TQLNIPKKDTRPQTDDVLNTKGRSFEDFY-----------LKRELLMGIFEAGFEKPSPIQEEAIPVAIAGKDILARAKNGTGKTAAFVIPTLEKV 98
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21 Identity = 56/126 (44.44%), Postives = 72/126 (57.14%), Query Frame = 1 Query: 304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 G P K + P ++ GK ++ + QALV+APTRELAQQI+KVM ALG+YL V + C+GGTSVR+DQR L+AG+ V VGTPGRV DM+ R +L IK Sbjct: 48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNALDTSRIK 173 HSP 2 Score: 99.3673 bits (246), Expect = 1.889e-20 Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 3 Query: 177 DTQMNELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDY 440 D ++ ++ DG +YD+V +SFD M L+E LLRGIY +GFEKPSAIQ+R IVP G++VI QAQSGTGKTATF ILQ++D+ Sbjct: 7 DVNVSSVVDADGL-IEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDH 93
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_SALSA (Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21 Identity = 65/140 (46.43%), Postives = 86/140 (61.43%), Query Frame = 1 Query: 301 MGLRSPLL---FSKGELFPSARDVRSFSRL--SLELGKQQLSAL----EFCSNLIMVLS----KCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 MGLR LL ++ G PSA R+ ++ ++ Q S FC +++ L + QAL+LAPTRELA QI+KV+ ALGDY+ V+ H+C+GGT+V ED R L G V GTPGRVFDM+RR+SLR IK Sbjct: 38 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 177 HSP 2 Score: 100.523 bits (249), Expect = 8.478e-21 Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 3 Query: 216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 +F TS + +V +FD MGLRE+LLRGIYAYGFEKPSAIQQR I KGR+VI Q+QSGTGKTATFC +LQ LD Sbjct: 22 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLD 96
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21 Identity = 64/140 (45.71%), Postives = 87/140 (62.14%), Query Frame = 1 Query: 301 MGLRSPLL---FSKGELFPSARDVRSFSRL--SLELGKQQLSAL----EFCSNLIMVLS----KCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 MGLR LL ++ G PSA ++ ++ ++ Q S FC +++ L + QAL+LAPT+ELA+QI+KV+ ALGDY+ V+ HAC+GGT+V ED R L G V GTPGRVFDM+RR+SLR IK Sbjct: 46 MGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQIRETQALILAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 185 HSP 2 Score: 99.3673 bits (246), Expect = 1.889e-20 Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 3 Query: 216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 +F TS + +V +FD MGLRE+LLRGIYAYGFEKPSAIQQ+ I KGR+VI Q+QSGTGKTATFC +LQ LD Sbjct: 30 EFQTSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLD 104
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 2.251e-21 Identity = 48/126 (38.10%), Postives = 76/126 (60.32%), Query Frame = 1 Query: 304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 G P + + P + ++ GK ++ + L CQAL++APTRELAQQI+KV+ A+GD++ + HAC+GGT++R+D + LQ G + VGTPGR+ DM++R+ L+ D +K Sbjct: 42 GFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRELAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMKALQEGPPIVVGTPGRIQDMIQRRVLKTDQMK 167 HSP 2 Score: 98.9821 bits (245), Expect = 2.467e-20 Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 3 Query: 225 TSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGL 446 ++Y++V DSFD+M L+ LLRG+YAYGFE+PSAIQQR I+P KG +VI QAQSGTGKTATF LQ++D L Sbjct: 16 SNYEDVTDSFDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPNL 89 The following BLAST results are available for this feature:
BLAST of CN185553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 478
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185553 ID=CN185553; Name=CN185553; organism=Citrus sinensis; type=EST; length=682bpback to top |