CN185553

Overview
NameCN185553
Unique NameCN185553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.787e-22
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 1
Query:  445 LSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQ 657
            L+K QAL++ PTRELA Q  +V+R LG + G+      GGT++R+D   L   V + VGTPGRV D+  R+
Sbjct:  112 LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK 182          

HSP 2 Score: 56.6102 bits (135), Expect = 8.787e-22
Identity = 35/117 (29.91%), Postives = 58/117 (49.57%), Query Frame = 3
Query:   84 TLSLDFNRQHQSFADMAGLAPEGSQFDARQYDTQMNELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQL 434
            +++ +FN  + S  D+            +    Q +++L+T G  F   Y           L+  LL GI+  GFEKPS IQ+  I     GR+++ +A++GTGKTA F    L+++
Sbjct:    3 SINNNFNTNNNSNTDLDRDWKTALNIPKKDTRPQTDDVLNTKGNTFEDFY-----------LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKV 108          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 8.789e-22
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  457 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654
            QA++L PTRELA Q  +V + L  YL ++V    GGTS+R+D   L   V + VGTPGR+ D+ ++
Sbjct:  194 QAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKK 259          

HSP 2 Score: 60.8474 bits (146), Expect = 8.789e-22
Identity = 27/64 (42.19%), Postives = 43/64 (67.19%), Query Frame = 3
Query:  246 DSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            + F+   L+ +LL+GIY  GFEKPS IQ+  I     G +++ +A++GTGKT  FC  +L+++D
Sbjct:  124 NEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKID 187          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RH34_ORYSJ (DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica GN=Os03g0566800 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = 1
Query:  304 GLRSPLLFSKGELFP--SARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            G   P    +  + P  S RDV   ++     GK  + +L  C  +   + + QAL+L+PTRELA Q E+VM A+GDY+ ++VHAC+GG S+ ED R L+ GV V  GTPGRV DM++R++LR   IK
Sbjct:   50 GFEKPSAIQQRAVLPIISGRDV--IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIK 175          

HSP 2 Score: 92.8189 bits (229), Expect = 1.768e-18
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 3
Query:  237 EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGLVQV 455
            EV  SFD MG+RE+LLRGIYAYGFEKPSAIQQR ++P   GR+VI QAQSGTGKT+     + Q +D  + +V
Sbjct:   28 EVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREV 100          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = 1
Query:  304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYI 678
            G   P    +  + P        ++     GK    ++     +   + K QALVLAPTRELAQQI+KV+ ALGDYL V  HACVGGT+VRED   L  G  + VGTPGRVFDM+ R +L+ + +
Sbjct:   47 GFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGTPGRVFDMINRGALKTEAV 171          

HSP 2 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 3
Query:  198 LSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            L  DG    ++++EV D+FD M L+  LLRGIYAYGFE+PSAIQQR I+P   GR+ I QAQSGTGKTATF   ILQ++D
Sbjct:   12 LQIDGDLINSNWNEVVDNFDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRID 91          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21
Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 1
Query:  394 GKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            GK    ++     +   +   QAL+LAPTRELAQQI+KV+ ALGDY+ +  HAC+GGT+VRED   L  G QV VGTPGRV+DM+ R++ + D +K
Sbjct:   87 GKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKIDCHACIGGTNVREDMAKLNEGAQVVVGTPGRVYDMINRRAFKTDQLK 182          

HSP 2 Score: 97.8265 bits (242), Expect = 5.495e-20
Identity = 50/83 (60.24%), Postives = 62/83 (74.70%), Query Frame = 3
Query:  189 NELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            N L   DG+   ++++ V D+FD M L+E LLRG+YAYGFE+PSAIQ R IVP  KG +VI QAQSGTGKTATF   ILQ++D
Sbjct:   20 NNLNIADGE-IESNWETVIDNFDNMELKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQRID 101          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.487e-21
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 1
Query:  445 LSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQ 657
            L+K QAL++ PTRELA Q  +V+R LG + G+      GGT++R+D   L   V + VGTPGRV D+  R+
Sbjct:  102 LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHILVGTPGRVLDLASRR 172          

HSP 2 Score: 55.4546 bits (132), Expect = 1.487e-21
Identity = 33/96 (34.38%), Postives = 54/96 (56.25%), Query Frame = 3
Query:  153 SQFDARQYDT--QMNELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQL 434
            +Q +  + DT  Q +++L+T G+ F   Y           L+  LL GI+  GFEKPS IQ+  I     G++++ +A++GTGKTA F    L+++
Sbjct:   14 TQLNIPKKDTRPQTDDVLNTKGRSFEDFY-----------LKRELLMGIFEAGFEKPSPIQEEAIPVAIAGKDILARAKNGTGKTAAFVIPTLEKV 98          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21
Identity = 56/126 (44.44%), Postives = 72/126 (57.14%), Query Frame = 1
Query:  304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            G   P    K  + P        ++     GK    ++     +       QALV+APTRELAQQI+KVM ALG+YL V +  C+GGTSVR+DQR L+AG+ V VGTPGRV DM+ R +L    IK
Sbjct:   48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNALDTSRIK 173          

HSP 2 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 3
Query:  177 DTQMNELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDY 440
            D  ++ ++  DG     +YD+V +SFD M L+E LLRGIY +GFEKPSAIQ+R IVP   G++VI QAQSGTGKTATF   ILQ++D+
Sbjct:    7 DVNVSSVVDADGL-IEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDH 93          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_SALSA (Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21
Identity = 65/140 (46.43%), Postives = 86/140 (61.43%), Query Frame = 1
Query:  301 MGLRSPLL---FSKGELFPSARDVRSFSRL--SLELGKQQLSAL----EFCSNLIMVLS----KCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            MGLR  LL   ++ G   PSA   R+  ++    ++  Q  S       FC +++  L     + QAL+LAPTRELA QI+KV+ ALGDY+ V+ H+C+GGT+V ED R L  G  V  GTPGRVFDM+RR+SLR   IK
Sbjct:   38 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 177          

HSP 2 Score: 100.523 bits (249), Expect = 8.478e-21
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 3
Query:  216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            +F TS + +V  +FD MGLRE+LLRGIYAYGFEKPSAIQQR I    KGR+VI Q+QSGTGKTATFC  +LQ LD
Sbjct:   22 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLD 96          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21
Identity = 64/140 (45.71%), Postives = 87/140 (62.14%), Query Frame = 1
Query:  301 MGLRSPLL---FSKGELFPSARDVRSFSRL--SLELGKQQLSAL----EFCSNLIMVLS----KCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            MGLR  LL   ++ G   PSA   ++  ++    ++  Q  S       FC +++  L     + QAL+LAPT+ELA+QI+KV+ ALGDY+ V+ HAC+GGT+V ED R L  G  V  GTPGRVFDM+RR+SLR   IK
Sbjct:   46 MGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQIRETQALILAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 185          

HSP 2 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 3
Query:  216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            +F TS + +V  +FD MGLRE+LLRGIYAYGFEKPSAIQQ+ I    KGR+VI Q+QSGTGKTATFC  +LQ LD
Sbjct:   30 EFQTSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLD 104          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.251e-21
Identity = 48/126 (38.10%), Postives = 76/126 (60.32%), Query Frame = 1
Query:  304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            G   P    +  + P  +     ++     GK    ++     +   L  CQAL++APTRELAQQI+KV+ A+GD++ +  HAC+GGT++R+D + LQ G  + VGTPGR+ DM++R+ L+ D +K
Sbjct:   42 GFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRELAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMKALQEGPPIVVGTPGRIQDMIQRRVLKTDQMK 167          

HSP 2 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 3
Query:  225 TSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGL 446
            ++Y++V DSFD+M L+  LLRG+YAYGFE+PSAIQQR I+P  KG +VI QAQSGTGKTATF    LQ++D  L
Sbjct:   16 SNYEDVTDSFDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPNL 89          
The following BLAST results are available for this feature:
BLAST of CN185553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
DHH1_YEAS78.787e-2246.48ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
RH12_ARATH8.789e-2245.45DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop... [more]
RH34_ORYSJ1.010e-2143.75DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sa... [more]
IF4A_CRYNE1.010e-2144.00ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
IF4A_USTMA1.320e-2151.04ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]
DHH1_KLULA1.487e-2146.48ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]
IF4A_CAEEL1.723e-2144.44Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]
IF4A3_SALSA1.723e-2146.43Eukaryotic initiation factor 4A-III OS=Salmo salar... [more]
I4A3B_XENLA1.723e-2145.71Eukaryotic initiation factor 4A-III-B OS=Xenopus l... [more]
IF4A_ASPTN2.251e-2138.10ATP-dependent RNA helicase eIF4A OS=Aspergillus te... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185553 ID=CN185553; Name=CN185553; organism=Citrus sinensis; type=EST; length=682bp
GCAGGCCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAGATCAAT
CTTCTCCTTCTCTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGATTT
TAATCGCCAGCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCCAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCGGGAAAACCTTTTGAGGGGAATCTATGCCT
ATGGGTTTGAGAAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACGTGAGGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AAGTGTCAGGCCCTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGAT
TGAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATG
CTTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCT
GGTGTTCAGGTTGCTGTTGGCACTCCGGGTCGTGTGTTTGACATGCTGCG
CCGACAGTCTTTACGCCCTGATTACATTAAGA
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