CN185553
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2) HSP 1 Score: 62.3882 bits (150), Expect = 2.514e-21 Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 Query: 457 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654 QA++L PTRELA Q +V + L YL ++V GGTS+R+D L V + VGTPGR+ D+ ++ Sbjct: 224 QAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKK 289 HSP 2 Score: 60.8474 bits (146), Expect = 2.514e-21 Identity = 38/126 (30.16%), Postives = 62/126 (49.21%), Query Frame = 3 Query: 105 RQHQSFADMAGLAPEGSQFDARQYDTQMNELLSTDGQDFFTSY-----DEVYDSFDAMG----------LRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 +Q Q ++ A L + S D + Q + ++ +D+ + D Y + D L+ +LLRGIY GFEKPS IQ+ I G +++ +A++GTGKT FC L+++D Sbjct: 92 QQEQQWSRRAQLPGDPSYIDEVEKTVQSEAISDSNNEDWKATLKLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKID 217
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21 Identity = 55/128 (42.97%), Postives = 79/128 (61.72%), Query Frame = 1 Query: 304 GLRSPLLFSKGELFP--SARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 G P + + P S RDV ++ GK + +L C + + + QAL+L+PTRELA Q E+VM A+GD++ ++VHAC+GG S+ ED R L+ GV V GTPGRV DM++R++LR IK Sbjct: 50 GFEKPSAIQQRAVLPIISGRDV--IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIK 175 HSP 2 Score: 91.6633 bits (226), Expect = 3.938e-18 Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 3 Query: 237 EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGLVQV 455 EV SFD MG+R++LLRGIYAYGFEKPSAIQQR ++P GR+VI QAQSGTGKT+ + Q +D + +V Sbjct: 28 EVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREV 100
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 3.274e-21 Identity = 28/64 (43.75%), Postives = 43/64 (67.19%), Query Frame = 3 Query: 246 DSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 + F+ L+ LL GIY GFE+PS IQ+ I GR+++ +A++GTGKTA FC +L+++D Sbjct: 131 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKID 194 HSP 2 Score: 60.8474 bits (146), Expect = 3.274e-21 Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1 Query: 457 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654 QA+++ PTRELA Q +V + LG +L ++V GGTS+++D L V + VGTPGR+ D+ ++ Sbjct: 201 QAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKK 266
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 3.276e-21 Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1 Query: 448 SKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQ 657 +K QAL++ PTRELA Q +V+R LG + G+ GGT++R+D L V + VGTPGRV D+ R+ Sbjct: 101 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK 170 HSP 2 Score: 56.225 bits (134), Expect = 3.276e-21 Identity = 32/84 (38.10%), Postives = 46/84 (54.76%), Query Frame = 3 Query: 183 QMNELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQL 434 Q ++LST G F Y L+ LL GI+ GFEKPS IQ+ I GR+++ +A++GTGKTA F L+++ Sbjct: 24 QTEDVLSTKGNTFEDFY-----------LKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTLEKV 96
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21 Identity = 51/126 (40.48%), Postives = 74/126 (58.73%), Query Frame = 1 Query: 304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 G +P + R + ++ GK ++ S++ CQALVL+PTRELAQQIE V+ LGDY+ V+ HAC+GGT V ED + LQ G + GTPGRV DM++R+++ P ++K Sbjct: 43 GFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMIKRRNIMPRHVK 168 HSP 2 Score: 84.3445 bits (207), Expect = 6.287e-16 Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 3 Query: 237 EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 ++Y +F++M L+ LL+GIY YGFE PSAIQ R I+ +GR+ I QAQSGTGKTATF GIL +D Sbjct: 21 KIYPTFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSID 87
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.253e-21 Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1 Query: 448 SKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDM 645 +K Q L+L PTRELA Q +V + LG +LG+ V GGT++R+D LQ V + VGTPGR+ D+ Sbjct: 114 TKVQCLILVPTRELALQTSQVCKTLGQHLGINVMVTTGGTTLRDDILRLQEPVHIIVGTPGRILDL 179 HSP 2 Score: 54.299 bits (129), Expect = 4.253e-21 Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 3 Query: 252 FDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 F+ ++ LL GI+ G+EKPS IQ+ I GR+++ +A++GTGKTA F L++++ Sbjct: 49 FEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERIN 110
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21 Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1 Query: 301 MGLRSPLL---FSKGELFPSARDVRSFSRL----------SLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 MGLR LL ++ G PSA R+ ++ GK ++ L + + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L G V GTPGRVFDM+RR+SLR IK Sbjct: 42 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 181 HSP 2 Score: 96.6709 bits (239), Expect = 1.224e-19 Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 3 Query: 216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 +F TS + +V +FD MGLRE+LLRGIYAYGFEKPSAIQQR I KGR+VI Q+QSGTGKTATF +LQ LD Sbjct: 26 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD 100
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_RAT (Eukaryotic initiation factor 4A-III OS=Rattus norvegicus GN=Eif4a3 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21 Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1 Query: 301 MGLRSPLL---FSKGELFPSARDVRSFSRL----------SLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 MGLR LL ++ G PSA R+ ++ GK ++ L + + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L G V GTPGRVFDM+RR+SLR IK Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 182 HSP 2 Score: 96.6709 bits (239), Expect = 1.224e-19 Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 3 Query: 216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 +F TS + +V +FD MGLRE+LLRGIYAYGFEKPSAIQQR I KGR+VI Q+QSGTGKTATF +LQ LD Sbjct: 27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD 101
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_PIG (Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21 Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1 Query: 301 MGLRSPLL---FSKGELFPSARDVRSFSRL----------SLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 MGLR LL ++ G PSA R+ ++ GK ++ L + + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L G V GTPGRVFDM+RR+SLR IK Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 182 HSP 2 Score: 96.6709 bits (239), Expect = 1.224e-19 Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 3 Query: 216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 +F TS + +V +FD MGLRE+LLRGIYAYGFEKPSAIQQR I KGR+VI Q+QSGTGKTATF +LQ LD Sbjct: 27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD 101
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_HUMAN (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4) HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21 Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1 Query: 301 MGLRSPLL---FSKGELFPSARDVRSFSRL----------SLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681 MGLR LL ++ G PSA R+ ++ GK ++ L + + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L G V GTPGRVFDM+RR+SLR IK Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 182 HSP 2 Score: 96.6709 bits (239), Expect = 1.224e-19 Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 3 Query: 216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437 +F TS + +V +FD MGLRE+LLRGIYAYGFEKPSAIQQR I KGR+VI Q+QSGTGKTATF +LQ LD Sbjct: 27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD 101 The following BLAST results are available for this feature:
BLAST of CN185553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 478
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185553 ID=CN185553; Name=CN185553; organism=Citrus sinensis; type=EST; length=682bpback to top |