CN185553

Overview
NameCN185553
Unique NameCN185553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 2.514e-21
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  457 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654
            QA++L PTRELA Q  +V + L  YL ++V    GGTS+R+D   L   V + VGTPGR+ D+ ++
Sbjct:  224 QAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKK 289          

HSP 2 Score: 60.8474 bits (146), Expect = 2.514e-21
Identity = 38/126 (30.16%), Postives = 62/126 (49.21%), Query Frame = 3
Query:  105 RQHQSFADMAGLAPEGSQFDARQYDTQMNELLSTDGQDFFTSY-----DEVYDSFDAMG----------LRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            +Q Q ++  A L  + S  D  +   Q   +  ++ +D+  +      D  Y + D             L+ +LLRGIY  GFEKPS IQ+  I     G +++ +A++GTGKT  FC   L+++D
Sbjct:   92 QQEQQWSRRAQLPGDPSYIDEVEKTVQSEAISDSNNEDWKATLKLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKID 217          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21
Identity = 55/128 (42.97%), Postives = 79/128 (61.72%), Query Frame = 1
Query:  304 GLRSPLLFSKGELFP--SARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            G   P    +  + P  S RDV   ++     GK  + +L  C  +   + + QAL+L+PTRELA Q E+VM A+GD++ ++VHAC+GG S+ ED R L+ GV V  GTPGRV DM++R++LR   IK
Sbjct:   50 GFEKPSAIQQRAVLPIISGRDV--IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIK 175          

HSP 2 Score: 91.6633 bits (226), Expect = 3.938e-18
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 3
Query:  237 EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLDYGLVQV 455
            EV  SFD MG+R++LLRGIYAYGFEKPSAIQQR ++P   GR+VI QAQSGTGKT+     + Q +D  + +V
Sbjct:   28 EVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREV 100          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.274e-21
Identity = 28/64 (43.75%), Postives = 43/64 (67.19%), Query Frame = 3
Query:  246 DSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            + F+   L+  LL GIY  GFE+PS IQ+  I     GR+++ +A++GTGKTA FC  +L+++D
Sbjct:  131 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKID 194          

HSP 2 Score: 60.8474 bits (146), Expect = 3.274e-21
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  457 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRR 654
            QA+++ PTRELA Q  +V + LG +L ++V    GGTS+++D   L   V + VGTPGR+ D+ ++
Sbjct:  201 QAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKK 266          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.276e-21
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  448 SKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQ 657
            +K QAL++ PTRELA Q  +V+R LG + G+      GGT++R+D   L   V + VGTPGRV D+  R+
Sbjct:  101 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK 170          

HSP 2 Score: 56.225 bits (134), Expect = 3.276e-21
Identity = 32/84 (38.10%), Postives = 46/84 (54.76%), Query Frame = 3
Query:  183 QMNELLSTDGQDFFTSYDEVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQL 434
            Q  ++LST G  F   Y           L+  LL GI+  GFEKPS IQ+  I     GR+++ +A++GTGKTA F    L+++
Sbjct:   24 QTEDVLSTKGNTFEDFY-----------LKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTLEKV 96          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 51/126 (40.48%), Postives = 74/126 (58.73%), Query Frame = 1
Query:  304 GLRSPLLFSKGELFPSARDVRSFSRLSLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            G  +P       +    R   + ++     GK    ++   S++      CQALVL+PTRELAQQIE V+  LGDY+ V+ HAC+GGT V ED + LQ G  +  GTPGRV DM++R+++ P ++K
Sbjct:   43 GFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMIKRRNIMPRHVK 168          

HSP 2 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 3
Query:  237 EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            ++Y +F++M L+  LL+GIY YGFE PSAIQ R I+   +GR+ I QAQSGTGKTATF  GIL  +D
Sbjct:   21 KIYPTFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSID 87          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.253e-21
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  448 SKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDM 645
            +K Q L+L PTRELA Q  +V + LG +LG+ V    GGT++R+D   LQ  V + VGTPGR+ D+
Sbjct:  114 TKVQCLILVPTRELALQTSQVCKTLGQHLGINVMVTTGGTTLRDDILRLQEPVHIIVGTPGRILDL 179          

HSP 2 Score: 54.299 bits (129), Expect = 4.253e-21
Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 3
Query:  252 FDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            F+   ++  LL GI+  G+EKPS IQ+  I     GR+++ +A++GTGKTA F    L++++
Sbjct:   49 FEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERIN 110          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  301 MGLRSPLL---FSKGELFPSARDVRSFSRL----------SLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            MGLR  LL   ++ G   PSA   R+  ++              GK    ++     L + + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L  G  V  GTPGRVFDM+RR+SLR   IK
Sbjct:   42 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 181          

HSP 2 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            +F TS + +V  +FD MGLRE+LLRGIYAYGFEKPSAIQQR I    KGR+VI Q+QSGTGKTATF   +LQ LD
Sbjct:   26 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD 100          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_RAT (Eukaryotic initiation factor 4A-III OS=Rattus norvegicus GN=Eif4a3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  301 MGLRSPLL---FSKGELFPSARDVRSFSRL----------SLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            MGLR  LL   ++ G   PSA   R+  ++              GK    ++     L + + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L  G  V  GTPGRVFDM+RR+SLR   IK
Sbjct:   43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 182          

HSP 2 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            +F TS + +V  +FD MGLRE+LLRGIYAYGFEKPSAIQQR I    KGR+VI Q+QSGTGKTATF   +LQ LD
Sbjct:   27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD 101          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_PIG (Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  301 MGLRSPLL---FSKGELFPSARDVRSFSRL----------SLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            MGLR  LL   ++ G   PSA   R+  ++              GK    ++     L + + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L  G  V  GTPGRVFDM+RR+SLR   IK
Sbjct:   43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 182          

HSP 2 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            +F TS + +V  +FD MGLRE+LLRGIYAYGFEKPSAIQQR I    KGR+VI Q+QSGTGKTATF   +LQ LD
Sbjct:   27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD 101          
BLAST of CN185553 vs. ExPASy Swiss-Prot
Match: IF4A3_HUMAN (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  301 MGLRSPLL---FSKGELFPSARDVRSFSRL----------SLELGKQQLSALEFCSNLIMVLSKCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVQVAVGTPGRVFDMLRRQSLRPDYIK 681
            MGLR  LL   ++ G   PSA   R+  ++              GK    ++     L + + + QAL+LAPTRELA QI+K + ALGDY+ V+ HAC+GGT+V ED R L  G  V  GTPGRVFDM+RR+SLR   IK
Sbjct:   43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 182          

HSP 2 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  216 DFFTSYD-EVYDSFDAMGLRENLLRGIYAYGFEKPSAIQQRGIVPFCKGREVIQQAQSGTGKTATFCSGILQQLD 437
            +F TS + +V  +FD MGLRE+LLRGIYAYGFEKPSAIQQR I    KGR+VI Q+QSGTGKTATF   +LQ LD
Sbjct:   27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD 101          
The following BLAST results are available for this feature:
BLAST of CN185553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
RH6_ARATH2.514e-2145.45DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]
RH2_ORYSJ2.940e-2142.97DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]
RH8_ARATH3.274e-2143.75DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
DHH1_VANPO3.276e-2145.71ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
FAL1_PICGU3.839e-2140.48ATP-dependent RNA helicase FAL1 OS=Pichia guillier... [more]
DHH1_BOTFB4.253e-2148.48ATP-dependent RNA helicase dhh1 OS=Botryotinia fuc... [more]
IF4A3_TAEGU5.014e-2145.00Eukaryotic initiation factor 4A-III OS=Taeniopygia... [more]
IF4A3_RAT5.014e-2145.00Eukaryotic initiation factor 4A-III OS=Rattus norv... [more]
IF4A3_PIG5.014e-2145.00Eukaryotic initiation factor 4A-III OS=Sus scrofa ... [more]
IF4A3_HUMAN5.014e-2145.00Eukaryotic initiation factor 4A-III OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185553 ID=CN185553; Name=CN185553; organism=Citrus sinensis; type=EST; length=682bp
GCAGGCCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAGATCAAT
CTTCTCCTTCTCTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGATTT
TAATCGCCAGCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCCAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCGGGAAAACCTTTTGAGGGGAATCTATGCCT
ATGGGTTTGAGAAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACGTGAGGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AAGTGTCAGGCCCTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGAT
TGAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATG
CTTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCT
GGTGTTCAGGTTGCTGTTGGCACTCCGGGTCGTGTGTTTGACATGCTGCG
CCGACAGTCTTTACGCCCTGATTACATTAAGA
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