CN185550

Overview
NameCN185550
Unique NameCN185550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_HUMAN (Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            +SRS RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_CHICK (Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            +SRS RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_BOVIN (Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            +SRS RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 66/96 (68.75%), Postives = 73/96 (76.04%), Query Frame = -3
Query:    2 MSGKGAKGLIMGXXXXXXXXXXXXK-----PISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 274
            M+GKG KGL+              K     P+SRSSRAG+QFPVGRIHR LK R +A+GRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:    1 MAGKGGKGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRI 96          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 66/93 (70.97%), Postives = 72/93 (77.42%), Query Frame = -3
Query:    2 MSGKGAKGLIMGXXXXXXXXXXXXKP--ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 274
            M+GKG KGL+              K   ISRSSRAG+QFPVGRIHR LK R +AHGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRI
Sbjct:    1 MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRI 93          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 9.705e-27
Identity = 60/65 (92.31%), Postives = 64/65 (98.46%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            I+RSSRAGLQFPVGRIHRLLK+RTT+HGRVG TAAVY+AAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRI 82          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 9.705e-27
Identity = 60/65 (92.31%), Postives = 64/65 (98.46%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            I+RSSRAGLQFPVGRIHRLLK+RTT+HGRVG TAAVY+AAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRI 82          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV_STRPU (Histone H2A.V (Fragment) OS=Strongylocentrotus purpuratus GN=H2A.F/Z PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.267e-26
Identity = 60/65 (92.31%), Postives = 64/65 (98.46%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            +SRS+RAGLQFPVGRIHR LK+RTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   15 VSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV_XENTR (Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 1.655e-26
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            +SRS RAGLQFPVGRIHR LK+RTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV_XENLA (Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 1.655e-26
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            +SRS RAGLQFPVGRIHR LK+RTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82          
The following BLAST results are available for this feature:
BLAST of CN185550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2AZ_HUMAN7.431e-2793.85Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2[more]
H2AZ_CHICK7.431e-2793.85Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3[more]
H2AZ_BOVIN7.431e-2793.85Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2[more]
H2AV2_ORYSJ7.431e-2768.75Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV2_ARATH7.431e-2770.97Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AZL_XENTR9.705e-2792.31Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA9.705e-2792.31Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AV_STRPU1.267e-2692.31Histone H2A.V (Fragment) OS=Strongylocentrotus pur... [more]
H2AV_XENTR1.655e-2692.31Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 ... [more]
H2AV_XENLA1.655e-2692.31Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185550 ID=CN185550; Name=CN185550; organism=Citrus sinensis; type=EST; length=366bp
TTATACGCTTCACCTTAAGATCTTTGCTTGCATTTCCAGCCAGCTCCAAC
ACCTCTGCAGTCAAATATTCCAAGATGGCAGCAGAGTACACAGCAGCAGT
CGCTCCTACTCTTCCATGTGCTGTGGTTCTTGACTTCAAAAGACGGTGAA
TCCGACCAACCGGGAACTGAAGGCCAGCACGGGAAGAGCGGGAAATGGGT
TTCTTCTTGTCCTTGTCCTTGTTACTAGCCGAGGCCTTTCCCATGATCAA
ACCTTTCGCGCCTTTTCCCGACATCTTTCCCGCCAATAATTTAACAGATT
TCGAGACAGAGACAGATTCCGCAAAGATGAAGAAAGACGGGTGAGGTTTC
AAAGCCAAAGAACCCT
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