CN185550

Overview
NameCN185550
Unique NameCN185550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.901e-16
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            +RSSRAGLQFPVGR+HR LK       RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   16 TRSSRAGLQFPVGRVHRFLKKGNYG-SRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRI 78          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.708e-16
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HR L+    A+ RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 78          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.708e-16
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HR L+    A+ RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 78          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A_USTMA (Histone H2A OS=Ustilago maydis GN=HTA1 PE=3 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.007e-15
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRS++AGLQFPVGRIHRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   20 SRSAKAGLQFPVGRIHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKSRI 82          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A_CHITH (Histone H2A OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.007e-15
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGRIHRLL+       RVGA A VY AA++EYL AEVLELAGNA++D K  RI
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYGE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 78          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            +RSSRAGLQFPVGR+HR L+    A  RVG  A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   16 TRSSRAGLQFPVGRVHRFLRKGNYAK-RVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRI 78          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            +RSSRAGLQFPVGR+HR L+    A  RVG  A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   16 TRSSRAGLQFPVGRVHRFLRKGNYAK-RVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRI 78          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.717e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HR L+    A  RVGA A VY AA++EYL AE+LELAGNA++D K  RI
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAE-RVGAGAPVYLAAVMEYLAAEILELAGNAARDNKKTRI 78          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AO_CHITH (Histone H2A, orphon OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.717e-15
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGRIHRLL+    A  R+GA A VY AA++EYL AE+LELAGNA++D K  RI
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGHYAE-RIGAGAPVYLAAVMEYLGAEILELAGNAARDNKKTRI 78          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.717e-15
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            +SRSS+AGLQFPVGRI R LK    A  R+GA A VY AA+LEYLTAEVLELAGNA++D K  RI
Sbjct:   15 VSRSSKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRI 78          
The following BLAST results are available for this feature:
BLAST of CN185550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A1_PSAMI5.901e-1668.75Late histone H2A.1 OS=Psammechinus miliaris PE=2 S... [more]
H2A_PARAN7.708e-1668.75Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2A3_PSAMI7.708e-1668.75Late histone H2A.3, gonadal OS=Psammechinus miliar... [more]
H2A_USTMA1.007e-1568.75Histone H2A OS=Ustilago maydis GN=HTA1 PE=3 SV=3[more]
H2A_CHITH1.007e-1570.31Histone H2A OS=Chironomus thummi thummi PE=3 SV=2[more]
H2A_STRPU1.315e-1567.19Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2AE_PSAMI1.315e-1567.19Histone H2A, embryonic OS=Psammechinus miliaris PE... [more]
H2A_ASTRU1.717e-1567.19Histone H2A OS=Asterias rubens PE=1 SV=2[more]
H2AO_CHITH1.717e-1568.75Histone H2A, orphon OS=Chironomus thummi thummi PE... [more]
H2A4_VOLCA1.717e-1569.23Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185550 ID=CN185550; Name=CN185550; organism=Citrus sinensis; type=EST; length=366bp
TTATACGCTTCACCTTAAGATCTTTGCTTGCATTTCCAGCCAGCTCCAAC
ACCTCTGCAGTCAAATATTCCAAGATGGCAGCAGAGTACACAGCAGCAGT
CGCTCCTACTCTTCCATGTGCTGTGGTTCTTGACTTCAAAAGACGGTGAA
TCCGACCAACCGGGAACTGAAGGCCAGCACGGGAAGAGCGGGAAATGGGT
TTCTTCTTGTCCTTGTCCTTGTTACTAGCCGAGGCCTTTCCCATGATCAA
ACCTTTCGCGCCTTTTCCCGACATCTTTCCCGCCAATAATTTAACAGATT
TCGAGACAGAGACAGATTCCGCAAAGATGAAGAAAGACGGGTGAGGTTTC
AAAGCCAAAGAACCCT
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