CN185550

Overview
NameCN185550
Unique NameCN185550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_SCHPO (Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.315e-20
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            +S S+RAGLQFPVGR+ R LK++T  + RVGA +AVYSAA+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 MSHSARAGLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRI 89          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_CRYNE (Histone H2A.Z OS=Cryptococcus neoformans GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.960e-19
Identity = 46/64 (71.88%), Postives = 57/64 (89.06%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            +RSS+AGLQFPVGRIHR L+++   + R+GA AAVY A+I+EYLTAEVLELAGNA+KDL+VKRI
Sbjct:   24 TRSSKAGLQFPVGRIHRFLRNKNANNVRIGAKAAVYVASIMEYLTAEVLELAGNAAKDLRVKRI 87          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_YEAST (Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.270e-18
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            S S+RAGLQFPVGRI R LK   T   RVG+ AA+Y  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   24 SSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 87          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_GIBZE (Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.830e-18
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            S S+RAGLQFP GR+ R LK  T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   30 SHSARAGLQFPCGRVKRFLKQNTQQKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 93          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_YARLI (Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.696e-18
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            S SSRAGLQFPVGRI R +K       RVGA AA+Y AA+LEYLTAEVLELAGNA++DLKVKRI
Sbjct:   31 SHSSRAGLQFPVGRIKRYMKKSVQNKVRVGAKAAIYIAAVLEYLTAEVLELAGNAARDLKVKRI 94          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_NEUCR (Histone H2A.Z OS=Neurospora crassa GN=htz-1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.696e-18
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            S S+RAGLQFP GR+ R LK  T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   29 SHSARAGLQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 92          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_MAGGR (Histone H2A.Z OS=Magnaporthe grisea GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.696e-18
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            S S+RAGLQFP GR+ R LK  T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   28 SHSARAGLQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 91          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_CHAGB (Histone H2A.Z OS=Chaetomium globosum GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.696e-18
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            S S+RAGLQFP GR+ R LK  T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   29 SHSARAGLQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 92          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_ASHGO (Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 3.696e-18
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            S S+RAGLQFPVGRI R LK       RVG+ AA+Y  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   24 SHSARAGLQFPVGRIKRYLKKNAAGKTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 87          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_KLULA (Histone H2A.Z OS=Kluyveromyces lactis GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.828e-18
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            S S+RAGLQFPVGR+ R LK       RVG+ AA+Y  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   24 SHSARAGLQFPVGRVKRYLKRNAAGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 87          
The following BLAST results are available for this feature:
BLAST of CN185550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2AZ_SCHPO2.315e-2075.38Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1... [more]
H2AZ_CRYNE1.960e-1971.88Histone H2A.Z OS=Cryptococcus neoformans GN=HTZ1 P... [more]
H2AZ_YEAST1.270e-1873.44Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 ... [more]
H2AZ_GIBZE2.830e-1873.44Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1[more]
H2AZ_YARLI3.696e-1873.44Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 ... [more]
H2AZ_NEUCR3.696e-1873.44Histone H2A.Z OS=Neurospora crassa GN=htz-1 PE=3 S... [more]
H2AZ_MAGGR3.696e-1873.44Histone H2A.Z OS=Magnaporthe grisea GN=HTZ1 PE=3 S... [more]
H2AZ_CHAGB3.696e-1873.44Histone H2A.Z OS=Chaetomium globosum GN=HTZ1 PE=3 ... [more]
H2AZ_ASHGO3.696e-1871.88Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3[more]
H2AZ_KLULA4.828e-1870.31Histone H2A.Z OS=Kluyveromyces lactis GN=HTZ1 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185550 ID=CN185550; Name=CN185550; organism=Citrus sinensis; type=EST; length=366bp
TTATACGCTTCACCTTAAGATCTTTGCTTGCATTTCCAGCCAGCTCCAAC
ACCTCTGCAGTCAAATATTCCAAGATGGCAGCAGAGTACACAGCAGCAGT
CGCTCCTACTCTTCCATGTGCTGTGGTTCTTGACTTCAAAAGACGGTGAA
TCCGACCAACCGGGAACTGAAGGCCAGCACGGGAAGAGCGGGAAATGGGT
TTCTTCTTGTCCTTGTCCTTGTTACTAGCCGAGGCCTTTCCCATGATCAA
ACCTTTCGCGCCTTTTCCCGACATCTTTCCCGCCAATAATTTAACAGATT
TCGAGACAGAGACAGATTCCGCAAAGATGAAGAAAGACGGGTGAGGTTTC
AAAGCCAAAGAACCCT
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