CN185550

Overview
NameCN185550
Unique NameCN185550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AJ_MACFA (Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.105e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AJ_HUMAN (Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.105e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AJ_BOVIN (Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.105e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.105e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.105e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A1_RAT (Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.105e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A1C_RAT (Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.105e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A1C_HUMAN (Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.105e-17
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A_SEPOF (Histone H2A OS=Sepia officinalis PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.189e-16
Identity = 51/91 (56.04%), Postives = 59/91 (64.84%), Query Frame = -3
Query:    2 MSGKGAKGLIMGXXXXXXXXXXXXKPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 274
            MSG+G  G + G               +RSSRAGLQFPVGRIHRLL+    A  RVGA A VY AA++EYL AEVLELAGNA++D K  RI
Sbjct:    1 MSGRGKGGKVKGKSK------------TRSSRAGLQFPVGRIHRLLRKGNYAQ-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKSRI 78          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.189e-16
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGRIHRLL+    A  RVGA A VY AA+LEYL+AE+LELAGNA++D K  RI
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRI 78          
The following BLAST results are available for this feature:
BLAST of CN185550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2AJ_MACFA9.105e-1771.88Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2... [more]
H2AJ_HUMAN9.105e-1771.88Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1[more]
H2AJ_BOVIN9.105e-1771.88Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1[more]
H2A4_CHICK9.105e-1771.88Histone H2A-IV OS=Gallus gallus PE=1 SV=2[more]
H2A2B_HUMAN9.105e-1771.88Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ... [more]
H2A1_RAT9.105e-1771.88Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2[more]
H2A1C_RAT9.105e-1771.88Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=... [more]
H2A1C_HUMAN9.105e-1771.88Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC ... [more]
H2A_SEPOF1.189e-1656.04Histone H2A OS=Sepia officinalis PE=1 SV=2[more]
H2A_ACRFO1.189e-1671.88Histone H2A OS=Acropora formosa PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185550 ID=CN185550; Name=CN185550; organism=Citrus sinensis; type=EST; length=366bp
TTATACGCTTCACCTTAAGATCTTTGCTTGCATTTCCAGCCAGCTCCAAC
ACCTCTGCAGTCAAATATTCCAAGATGGCAGCAGAGTACACAGCAGCAGT
CGCTCCTACTCTTCCATGTGCTGTGGTTCTTGACTTCAAAAGACGGTGAA
TCCGACCAACCGGGAACTGAAGGCCAGCACGGGAAGAGCGGGAAATGGGT
TTCTTCTTGTCCTTGTCCTTGTTACTAGCCGAGGCCTTTCCCATGATCAA
ACCTTTCGCGCCTTTTCCCGACATCTTTCCCGCCAATAATTTAACAGATT
TCGAGACAGAGACAGATTCCGCAAAGATGAAGAAAGACGGGTGAGGTTTC
AAAGCCAAAGAACCCT
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