CN185550

Overview
NameCN185550
Unique NameCN185550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A_DROHY (Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.553e-16
Identity = 51/91 (56.04%), Postives = 59/91 (64.84%), Query Frame = -3
Query:    2 MSGKGAKGLIMGXXXXXXXXXXXXKPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 274
            MSG+G  G + G               SRS+RAGLQFPVGRIHRLL+    A  RVGA A VY AA++EYL AEVLELAGNA++D K  RI
Sbjct:    1 MSGRGKGGKVKGKAK------------SRSNRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 78          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A_DROER (Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.553e-16
Identity = 51/91 (56.04%), Postives = 59/91 (64.84%), Query Frame = -3
Query:    2 MSGKGAKGLIMGXXXXXXXXXXXXKPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 274
            MSG+G  G + G               SRS+RAGLQFPVGRIHRLL+    A  RVGA A VY AA++EYL AEVLELAGNA++D K  RI
Sbjct:    1 MSGRGKGGKVKGKAK------------SRSNRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 78          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.553e-16
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGHYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.553e-16
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGHYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.553e-16
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HR L+    A+ RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRI 78          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.028e-16
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            +RSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.028e-16
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            +RSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A3_RAT (Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.028e-16
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HRLL+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A3_MOUSE (Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.028e-16
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HRLL+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2A3_HUMAN (Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.028e-16
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = -3
Query:    2 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 193
            SRSSRAGLQFPVGR+HRLL+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
The following BLAST results are available for this feature:
BLAST of CN185550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A_DROHY1.553e-1656.04Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2[more]
H2A_DROER1.553e-1656.04Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=... [more]
H2AX_MOUSE1.553e-1671.88Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2[more]
H2AX_HUMAN1.553e-1671.88Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2[more]
H2A4_PSAMI1.553e-1670.31Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A_ONCMY2.028e-1670.31Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2AX_DANRE2.028e-1670.31Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]
H2A3_RAT2.028e-1670.31Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3[more]
H2A3_MOUSE2.028e-1670.31Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=... [more]
H2A3_HUMAN2.028e-1670.31Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185550 ID=CN185550; Name=CN185550; organism=Citrus sinensis; type=EST; length=366bp
TTATACGCTTCACCTTAAGATCTTTGCTTGCATTTCCAGCCAGCTCCAAC
ACCTCTGCAGTCAAATATTCCAAGATGGCAGCAGAGTACACAGCAGCAGT
CGCTCCTACTCTTCCATGTGCTGTGGTTCTTGACTTCAAAAGACGGTGAA
TCCGACCAACCGGGAACTGAAGGCCAGCACGGGAAGAGCGGGAAATGGGT
TTCTTCTTGTCCTTGTCCTTGTTACTAGCCGAGGCCTTTCCCATGATCAA
ACCTTTCGCGCCTTTTCCCGACATCTTTCCCGCCAATAATTTAACAGATT
TCGAGACAGAGACAGATTCCGCAAAGATGAAGAAAGACGGGTGAGGTTTC
AAAGCCAAAGAACCCT
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