CN185546

Overview
NameCN185546
Unique NameCN185546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10630 contig Csv1_Contig10630:554..1313. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: YFG5_SCHPO (Uncharacterized mitochondrial carrier C19G12.05 OS=Schizosaccharomyces pombe GN=SPAC19G12.05 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.027e-16
Identity = 56/169 (33.14%), Postives = 82/169 (48.52%), Query Frame = -2
Query:  253 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 759
            +TPFE +K  +   R      LK  G +  +R+I+ E G+ GL+ G A TV R   N    FTA N+    L  +   D K L    + + G +AG     CT P D VK+R+ + S      +YK  +H    I  ++GLL  W G  PRL R+     I++ V ++V
Sbjct:  122 LTPFESIKTAIIDDRKRPNPRLK--GFLQASRIIVHENGIRGLYRGLAATVARQAANSGVRFTAYNSIKQSLQSRLPPDEK-LSTVTTFLVGSVAGIITVYCTQPIDTVKSRMQSLS---ASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGIVFTVYEKV 284          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TXTP_CAEEL (Putative tricarboxylate transport protein, mitochondrial OS=Caenorhabditis elegans GN=K11H3.3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 59/177 (33.33%), Postives = 85/177 (48.02%), Query Frame = -2
Query:  238 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFL---AGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYE 759
            VTP E VK++    +GL+    KYKG +H    I++ EGL G++ G   T+ + G+NQA  F     F +   K     G   QP    I G +   AG A      P DVVKTR+    +G    KYK  +     I+ +EG  A +KG +PRL R+     I + + D +  F +
Sbjct:  140 VTPMETVKVKFIHDQGLAQP--KYKGFVHGVGCIVKAEGLGGIYKGVTATMAKQGSNQAIRF-----FVMETLKDWYRGGDNTQPISKPIVGLMGAVAGAASVYGNTPIDVVKTRM----QGLEAKKYKNTLDCAMQIWKKEGFFAFYKGTVPRLSRVCLDVGITFMIYDSIIEFLD 305          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TPC1_NEUCR (Mitochondrial thiamine pyrophosphate carrier 1 OS=Neurospora crassa GN=tpc-1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 65/180 (36.11%), Postives = 85/180 (47.22%), Query Frame = -2
Query:  265 VTPFEVVKIRLQ-QQRGLSLELLK------------YKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGD-GKVLQPW-QSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAV 759
            + P +VVKIRLQ Q   LS  LL             YKG +   R I+R EGL GLW G  P  +   +  A  FT   +    L      D  K L P  +S I+G  AG      T P D+++TR  AQ   G E  Y  +V A++TIYA EG+   ++GL P L +I P     + V
Sbjct:   32 IAPLDVVKIRLQLQHHSLSDPLLHQRRAEIIGGGPVYKGTLPTIRHILRTEGLTGLWKGNIPAELLYVSYAAVQFTTYRSITQFLQAAFPKDQNKQLPPSVESFIAGASAGGVATAVTYPLDLLRTRFAAQ---GVERVYPSLVQALKTIYASEGVTGYFRGLGPGLAQIIPYMGTFFCV 208          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: MFTC_MOUSE (Mitochondrial folate transporter/carrier OS=Mus musculus GN=Slc25a32 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.314e-15
Identity = 57/153 (37.25%), Postives = 76/153 (49.67%), Query Frame = -2
Query:  304 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRG---GGELKYKGMVHAIRTIYAEEGLLALWKGLLPRL 753
            P ++VKIR     GL +   KYKG +HC   I + +GL GL+ G  P V   G +    F   NA       K EG  + L+P + ++S   AG      T P  V KTRLM Q  G     + +YKGM  A+  IY  EG+  L+KG +P L
Sbjct:   42 PLDLVKIRFAVSDGLEVRP-KYKGILHCLATIWKVDGLRGLYQGVTPNVWGAGLSWGLYFFFYNAIKSY---KTEGRAEQLEPLEYLVSAAEAGAMTLCITNPLWVTKTRLMLQYGGVASPSQRQYKGMFDALVKIYKYEGVRGLYKGFVPGL 190          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: HDCPA_DANRE (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog A OS=Danio rerio GN=hdmcpa PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.314e-15
Identity = 61/191 (31.94%), Postives = 94/191 (49.21%), Query Frame = -2
Query:  211 VTPFEVVKIRLQQQRGLSLELL-------KYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQ-SMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRYLRNAPL 759
            ++P ++VK+RLQ Q      +        KY GPIHC   I RE+GL GL+ GA P  +R+G + A  F   +     L  +   DG+    W   ++SG +AG +G     P DV+K RL       G+ +Y+G++H +      EGL   ++ L    +R  P   +++AV +        R LR+APL
Sbjct:  112 MSPGDIVKVRLQCQTESRHSVNPKYSVKPKYSGPIHCLLSICREQGLSGLYRGALPLALRDGPSFATYFLTYHT----LCARLTPDGQKEPEWTVVLLSGGVAGMSGWAVGTPMDVIKARLQMDG-VRGQRRYRGLLHCLTVTTRTEGLGVFFRSLGINCLRAFPVNMVVFAVYE-----VSVRVLRSAPL 292          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: MCFE_DICDI (Mitochondrial substrate carrier family protein E OS=Dictyostelium discoideum GN=mcfE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.716e-15
Identity = 62/174 (35.63%), Postives = 88/174 (50.57%), Query Frame = -2
Query:  253 PFEVVKIRLQQQRG---LSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTA----KNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 753
            P +++K RLQ Q     L+     YKG  H  ++I++EEG+ GL+ G  P +   G      F+     K+    LL K  E D  +  P+Q + SGF AG      T P DV+KTR+  Q R   +  YKGM  + +TI  EEG  A  KG+  R+  I PG A+  A  +Q+
Sbjct:  126 PMDIIKQRLQVQTNTQKLNPNQTYYKGSFHAGKIILQEEGIRGLYRGFMPALATYGPFVGIYFSVYEKCKSTISSLLSK--EKDQYLPIPYQ-LGSGFFAGAFAAAVTCPLDVIKTRIQVQ-RSTEKQIYKGMWDSFKTILKEEGPKAFVKGMGARIWWIAPGNALTIASYEQL 295          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TXTP_BOVIN (Tricarboxylate transport protein, mitochondrial OS=Bos taurus GN=SLC25A1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.241e-15
Identity = 55/170 (32.35%), Postives = 86/170 (50.59%), Query Frame = -2
Query:  253 VTPFEVVKIR-LQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 759
            V P E +K++ +  Q   S    KY+G  H  R I+RE+GL G + G   TV++ G+NQ   F    +  +  W + +   K + P  + + G +AG A      P DV+KTR+    +G    KY+  +     I   EGL A +KG +PRL R+    AI++ + D+V
Sbjct:  140 VCPMETIKVKFIHDQTSASP---KYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQGIRFFVMTS--LRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRM----QGLEAHKYRNTLDCGLQILRNEGLKAFYKGTVPRLGRVCLDVAIVFIIYDEV 300          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: HDMCP_HUMAN (Hepatocellular carcinoma down-regulated mitochondrial carrier protein OS=Homo sapiens GN=HDMCP PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.241e-15
Identity = 62/192 (32.29%), Postives = 94/192 (48.96%), Query Frame = -2
Query:  253 TPFEVVKIRLQ-------QQRGLSLE----------------LLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLL-WKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 756
            +P EV K+RLQ       QQR LS                    KY+GP+HC   + REEGL GL+ G++  V+R+G + A  F    ++ VL  W    G  +   P   +++G  AG        P DV+K+RL  Q+ G G+ +Y+G++H + T   EEG   L+KGL+    R  P   +++   + V
Sbjct:  114 SPTEVAKVRLQTQTQAQKQQRRLSASGPLAVPPMCPVPPACPEPKYRGPLHCLATVAREEGLCGLYKGSSALVLRDGHSFATYFL---SYAVLCEWLSPAGHSRPDVP-GVLVAGGCAGVLAWAVATPMDVIKSRL--QADGQGQRRYRGLLHCMVTSVREEGPRVLFKGLVLNCCRAFPVNMVVFVAYEAV 299          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TXTP_HUMAN (Tricarboxylate transport protein, mitochondrial OS=Homo sapiens GN=SLC25A1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.927e-15
Identity = 54/169 (31.95%), Postives = 86/169 (50.89%), Query Frame = -2
Query:  253 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 759
            V P E +K++    +  +    KY+G  H  R I+RE+GL G + G   TV++ G+NQA  F    +  +  W + +   K + P  + + G +AG A      P DV+KTR+    +G    KY+        I  +EGL A +KG +PRL R+    AI++ + D+V
Sbjct:  140 VCPMETIKVKFIHDQ--TSPNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTS--LRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRM----QGLEAHKYRNTWDCGLQILKKEGLKAFYKGTVPRLGRVCLDVAIVFVIYDEV 300          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: AGC1_YEAST (Mitochondrial aspartate-glutamate transporter AGC1 OS=Saccharomyces cerevisiae GN=AGC1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.927e-15
Identity = 62/175 (35.43%), Postives = 86/175 (49.14%), Query Frame = -2
Query:  244 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTA-----KNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGF 753
            P E+VKIRLQ Q     E ++       A  I+++ GL GL+ G A  +MR+    A  F       K+ FD     K + +   L+ W+ + +G +AG      T PFDV+KTRL    R G E KY G+ HAIRTI  EE   + +KG   R++R  P      A  +   GF
Sbjct:  644 PLEIVKIRLQVQSDYVGENIQQAN--ETATQIVKKLGLRGLYNGVAACLMRDVPFSAIYFPTYAHLKKDLFDFDPNDKTKRNR--LKTWELLTAGAIAGMPAAFLTTPFDVIKTRLQIDPRKG-ETKYNGIFHAIRTILKEESFRSFFKGGGARVLRSSPQFGFTLAAYELFKGF 813          
The following BLAST results are available for this feature:
BLAST of CN185546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
YFG5_SCHPO2.027e-1633.14Uncharacterized mitochondrial carrier C19G12.05 OS... [more]
TXTP_CAEEL7.702e-1633.33Putative tricarboxylate transport protein, mitocho... [more]
TPC1_NEUCR7.702e-1636.11Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
MFTC_MOUSE1.314e-1537.25Mitochondrial folate transporter/carrier OS=Mus mu... [more]
HDCPA_DANRE1.314e-1531.94Hepatocellular carcinoma down-regulated mitochondr... [more]
MCFE_DICDI1.716e-1535.63Mitochondrial substrate carrier family protein E O... [more]
TXTP_BOVIN2.241e-1532.35Tricarboxylate transport protein, mitochondrial OS... [more]
HDMCP_HUMAN2.241e-1532.29Hepatocellular carcinoma down-regulated mitochondr... [more]
TXTP_HUMAN2.927e-1531.95Tricarboxylate transport protein, mitochondrial OS... [more]
AGC1_YEAST2.927e-1535.43Mitochondrial aspartate-glutamate transporter AGC1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185546 ID=CN185546; Name=CN185546; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTGAGAAAATCTGGCAACTACCTACATTTTCCCCTTCC
TAGGCATGGCAAATTACTGATTCGGTCTACAAAAACTGGTGTTCAATCAA
AGAATCCTTAAGAACTCAAAAAGAAATGCTGAAGCAATTCATAGCTTCAT
GCTAGCAATGGAAGTATGTAACTAAAATGTAGAATAGGCAAAACAATAAA
ATAGTACCTATAAGGGTGCATTGCGAAGATATCTCCTCTCATAAAAACCA
GTCACTTGGTCAGCCACAGCCCACATAATGGCCTGGCCTGGCGGGATCCT
CATGAGACGGGGCAGCAGTCCTTTCCACAAGGCAAGAAGCCCCTCCTCAG
CATATATTGTTCTGATTGCATGGACCATGCCTTTGTACTTTAACTCACCC
CCACCTCGACTCTGGGCCATCAGCCTTGTCTTGACAACATCAAAAGGGCC
AGTGCATACTGGACCTGCTGTTCCTGCAAGGAATCCCGATATCATGGACT
GCCACGGTTGGAGGACCTTCCCATCACCTTCATGTTTCTTCCACAAGAGT
ACATCAAAAGCATTTTTAGCCGTAAACATGGCAGCTTGGTTTGTCCCATT
GCGCATAACAGTTGGGGCAGCCCCTGCCCAGAGTCCAAAGAGTCCTTCCT
CACGGATGATCATACGAGCACAGTGTATAGGACCCTTGTACTTTAGAAGC
TCAAGACTCAAACCTCTCTGCTGTTGTAGTCTAATTTTCACCACCTCAAA
AGGAGTAACA
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