CN185546

Overview
NameCN185546
Unique NameCN185546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10630 contig Csv1_Contig10630:554..1313. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: S2543_MOUSE (Solute carrier family 25 member 43 OS=Mus musculus GN=Slc25a43 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = -2
Query:  316 RMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGL 666
            R +   EG   LW G     +R          A   F VL     +  G++ Q W S+++G LAG    + T P D++KTRLM Q+    E  Y+G++HA  TIY +EG LAL++G+
Sbjct:   57 RRVWLSEGPRALWKGNGVACLRLFPCSMVQLAAYRKFVVLFM---DDLGRISQ-WSSIVTGSLAGMVSTIVTYPTDLIKTRLMVQN--VLEPSYRGLIHAFSTIYQQEGFLALYRGV 167          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: S2535_DANRE (Solute carrier family 25 member 35 OS=Danio rerio GN=slc25a35 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 52/173 (30.06%), Postives = 80/173 (46.24%), Query Frame = -2
Query:  268 PFEVVKIRLQQQRGLSLE---LLKYKGPIHCARMIIREEGLFGLWAGAAPTVM----RNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRG----GGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWA 753
            P EVVK R+Q Q  L       + Y+   H    I + +GL GL  G  P ++     NG    +    ++   +        DG+V    +S +SG +AG  G V   P  +VKT L +QS      G + K++GM +A+  I+ + G+L LW+G    + R+  G A   A
Sbjct:   19 PLEVVKTRMQLQGELKSRGTYQVYYRNVFHAFYTIGKIDGLAGLQKGLVPGLVYQFFMNGVRLGSYALTESLGYI------HTDGRV-SATKSTVSGAIAGVVGAVMGSPIYLVKTHLQSQSTSSIAVGHQYKHRGMTNALFAIHKQHGILGLWRGASAAIPRVSVGSAAQLA 184          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: MCP62_MOUSE (Putative mitochondrial carrier protein FLJ44862 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 54/171 (31.58%), Postives = 82/171 (47.95%), Query Frame = -2
Query:  271 PFEVVKIRLQQQ--------RGL-SLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEG-DGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMW 753
            P E++KIRLQ Q         GL S  +  Y+GP+HC   I++ EGL GL+ GA+  ++R+       F          W   E   G    P+ + ++G +AG        P DVVK+R+  Q+ G    KY+G+V  I   Y +EG    ++G+    +R  P  A M+
Sbjct:  123 PVELIKIRLQMQTQPFREASHGLKSRAVAAYQGPVHCIATIVQMEGLTGLYRGASAMLLRDIPGYCFYFIPYVFLSE--WITPEACTGP--SPYAAWLAGGIAGAISWGTATPMDVVKSRI--QADGVYLNKYRGVVDCISQSYQQEGFKVFFRGITVNAVRGFPMSAAMF 287          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: CMC3_CAEBR (Probable calcium-binding mitochondrial carrier CBG00135 OS=Caenorhabditis briggsae GN=CBG00135 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 46/175 (26.29%), Postives = 78/175 (44.57%), Query Frame = -2
Query:  229 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRY 753
            PF+ +K+ LQ     + +L    G + C  ++  E GL   W G    V++     A  F + +   +  W +    G  L  ++ + +G  AG        P +V+KTRL  +  G  +   +GM+H    +Y +EG+   +KG LP L+ I P   I   V + +   Y + Y
Sbjct:  265 PFDRIKVYLQVNSTKTNKL----GVVSCVHLLHAEGGLKSFWRGNGINVIKIAPESAMKFMSYD--QIKRWIQEYKGGAELTTYERLFAGSSAGAISQTAIYPMEVMKTRLALRRTGQLD---RGMIHFAHKMYDKEGIRCFYKGYLPNLLGIIPYAGIDLTVYETLKSCYTQYY 430          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: CMC2_MACFA (Calcium-binding mitochondrial carrier protein Aralar2 OS=Macaca fascicularis GN=SLC25A13 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 52/159 (32.70%), Postives = 76/159 (47.80%), Query Frame = -2
Query:  289 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFT----AKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPP 753
            P E+VKIRLQ    ++       GP   A  ++R+ G FG++ GA    +R+    A  F     A+ +F          DG+V  P   +++G +AG        P DV+KTRL   +R G +  Y G++   + I  EEG  ALWKG   R+ R  P
Sbjct:  448 PLEIVKIRLQVAGEITT------GPRVSALSVVRDLGFFGIYKGAKACFLRDIPFSAIYFPCYAHARASFA-------NEDGQV-SPGSLLLAGAIAGMPAASLVTPADVIKTRLQVAARAG-QTTYSGVIDCFKKILREEGPKALWKG-AARVFRSSP 590          
The following BLAST results are available for this feature:
BLAST of CN185546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
S2543_MOUSE9.743e-1135.90Solute carrier family 25 member 43 OS=Mus musculus... [more]
S2535_DANRE9.743e-1130.06Solute carrier family 25 member 35 OS=Danio rerio ... [more]
MCP62_MOUSE9.743e-1131.58Putative mitochondrial carrier protein FLJ44862 ho... [more]
CMC3_CAEBR9.743e-1126.29Probable calcium-binding mitochondrial carrier CBG... [more]
CMC2_MACFA9.743e-1132.70Calcium-binding mitochondrial carrier protein Aral... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185546 ID=CN185546; Name=CN185546; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTGAGAAAATCTGGCAACTACCTACATTTTCCCCTTCC
TAGGCATGGCAAATTACTGATTCGGTCTACAAAAACTGGTGTTCAATCAA
AGAATCCTTAAGAACTCAAAAAGAAATGCTGAAGCAATTCATAGCTTCAT
GCTAGCAATGGAAGTATGTAACTAAAATGTAGAATAGGCAAAACAATAAA
ATAGTACCTATAAGGGTGCATTGCGAAGATATCTCCTCTCATAAAAACCA
GTCACTTGGTCAGCCACAGCCCACATAATGGCCTGGCCTGGCGGGATCCT
CATGAGACGGGGCAGCAGTCCTTTCCACAAGGCAAGAAGCCCCTCCTCAG
CATATATTGTTCTGATTGCATGGACCATGCCTTTGTACTTTAACTCACCC
CCACCTCGACTCTGGGCCATCAGCCTTGTCTTGACAACATCAAAAGGGCC
AGTGCATACTGGACCTGCTGTTCCTGCAAGGAATCCCGATATCATGGACT
GCCACGGTTGGAGGACCTTCCCATCACCTTCATGTTTCTTCCACAAGAGT
ACATCAAAAGCATTTTTAGCCGTAAACATGGCAGCTTGGTTTGTCCCATT
GCGCATAACAGTTGGGGCAGCCCCTGCCCAGAGTCCAAAGAGTCCTTCCT
CACGGATGATCATACGAGCACAGTGTATAGGACCCTTGTACTTTAGAAGC
TCAAGACTCAAACCTCTCTGCTGTTGTAGTCTAATTTTCACCACCTCAAA
AGGAGTAACA
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