CN185546

Overview
NameCN185546
Unique NameCN185546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10630 contig Csv1_Contig10630:554..1313. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TPC_MACFA (Mitochondrial thiamine pyrophosphate carrier OS=Macaca fascicularis GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.956e-12
Identity = 56/179 (31.28%), Postives = 84/179 (46.93%), Query Frame = -2
Query:  238 VTPFEVVKIRLQ-QQRGLSLE--LLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQ-SMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELK-YKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYE 759
            ++PF+V+KIR Q Q   LS      KY G    +R I++EEGL   W G  P  + +    A  F +   F++L    H G     + +    + G LA     +   P DV++TR  AQ    GE K Y  + HA+ T+Y  EG    +KGL P L+ I P   + ++    +   Y+
Sbjct:   33 ISPFDVIKIRFQLQHERLSRRDPNAKYHGIFQASRQILQEEGLTAFWKGHIPAQILSIGYGAVQFLS---FEMLTELVHRGSVYDAREFSVHFVCGGLAACTATLTVHPVDVLRTRFAAQ----GEPKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYK 204          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: RIM2_YEAST (Mitochondrial carrier protein RIM2 OS=Saccharomyces cerevisiae GN=RIM2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.956e-12
Identity = 48/172 (27.91%), Postives = 78/172 (45.35%), Query Frame = -2
Query:  271 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDG-----------KVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMW 753
            P  ++K R+Q  +     + +YK    C + +IR EG  GL+ G + + + +          +    ++  +  E  G           KV +  Q   S  LA     + T P +VV+TRL    +  G+ KY G+V + + I  EEGL +++ GL P LMR  P   IM+
Sbjct:  195 PIWLIKTRVQLDKAGKTSVRQYKNSWDCLKSVIRNEGFTGLYKGLSASYLGSVEGILQWLLYEQMKRLIKERSIEKFGYQAEGTKSTSEKVKEWCQRSGSAGLAKFVASIATYPHEVVRTRLRQTPKENGKRKYTGLVQSFKVIIKEEGLFSMYSGLTPHLMRTVPNSIIMF 366          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: M2OM_MOUSE (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Mus musculus GN=Slc25a11 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.956e-12
Identity = 53/179 (29.61%), Postives = 80/179 (44.69%), Query Frame = -2
Query:  226 TPFEVVKIRLQQQRGLSLELLK-YKGPIHCARMIIREEGLFGLWAGAAPTVMRNGT-NQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRYL 756
            TP EV  IR+     L  +  + YK   +    I REEG+  LW G  PT+ R    N A + +   +   LL   +  D  +     SMISG +   A      P D+VKTR+       G+ +YK  +  +  +   EG  +LWKG  P   R+ P   + +   +Q+   Y+R +L
Sbjct:  138 TPAEVALIRMTADGRLPADQRRGYKNVFNALVRIAREEGVPTLWRGCIPTMARAVVVNAAQLASYSQSKQFLLDSGYFSDNILCHFCASMISGLVTTAASM----PVDIVKTRIQNMRMIDGKPEYKNGLDVLLKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFLEQMNKAYKRLFL 312          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: YD1K_SCHPO (Uncharacterized mitochondrial carrier C4G9.20c OS=Schizosaccharomyces pombe GN=SPAC4G9.20c PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.166e-12
Identity = 54/172 (31.40%), Postives = 80/172 (46.51%), Query Frame = -2
Query:  250 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQP-WQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGG-GELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVT 759
            V P E V+IRLQ Q G ++    Y GP  C + I  + GL G+  G  PT  R        F A  A       KH    +   P W+  + G  AG A  +   PFD+VK+++  Q+ G   +  YK      + IY + GL   ++G +P L+R  P  A+ + V + V+
Sbjct:  130 VGPVEHVRIRLQIQTGKNV---LYHGPWDCIKKISSQYGLSGIMKGYNPTAAREAHGLGMYFLAYEALVKNTMAKHHLTDRSQTPGWKLCVFGAGAGYAMWLAAYPFDIVKSKI--QTDGFLSKATYKNSWQCAKGIYTKAGLRGFYRGFVPVLVRAAPANAVTFYVYETVS 296          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TPC1_EMENI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Emericella nidulans GN=tpc1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.166e-12
Identity = 54/172 (31.40%), Postives = 79/172 (45.93%), Query Frame = -2
Query:  268 VTPFEVVKIRLQQQ-RGLS-------LELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWA 759
            + P +VVKIRLQ Q   LS       +    YKG +   + I+REEGL GLW G  P  +         FT       LL        ++ QP +S ISG L G      T P D+++TR  AQ  G   + Y+ +  ++R I   EG +  ++G    + +I P   + +A
Sbjct:   32 IAPLDVVKIRLQLQIHSLSDPTSHAHITGPVYKGTLSTIKTILREEGLTGLWKGNIPAELLYVCYGGIQFTTYRTTTQLL--AQLDPHRLPQPIESFISGALGGGIATAATYPLDLLRTRFAAQGSGDNRV-YESLFASLRDIAKTEGTVGFFRGCSAAVGQIVPYMGLFFA 200          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.166e-12
Identity = 44/143 (30.77%), Postives = 67/143 (46.85%), Query Frame = -2
Query:  265 KYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAV 693
            KY G     +MIIREEG+ GL+ G   + +      A  FT           K      V    QS+  G ++G      T P D+++ RL  Q  GG ++ Y G   A R I  +EG+L L+ G++P  +++ P  +I + V
Sbjct:  277 KYNGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPKDTTPTVV----QSLTFGAISGATAQTLTYPIDLIRRRLQVQGIGGKDILYNGTFDAFRKIIRDEGVLGLYNGMIPCYLKVIPAISISFCV 415          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: M2OM_HUMAN (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Homo sapiens GN=SLC25A11 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 5.166e-12
Identity = 52/179 (29.05%), Postives = 79/179 (44.13%), Query Frame = -2
Query:  226 TPFEVVKIRLQQQRGLSLELLK-YKGPIHCARMIIREEGLFGLWAGAAPTVMRNGT-NQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRYL 756
            TP EV  IR+     L  +  + YK   +    I REEG+  LW G  PT+ R    N A + +   +   LL   +  D  +     SMISG +   A      P D+ KTR+       G+ +YK  +  +  +   EG  +LWKG  P   R+ P   + +   +Q+   Y+R +L
Sbjct:  138 TPAEVALIRMTADGRLPADQRRGYKNVFNALIRITREEGVLTLWRGCIPTMARAVVVNAAQLASYSQSKQFLLDSGYFSDNILCHFCASMISGLVTTAASM----PVDIAKTRIQNMRMIDGKPEYKNGLDVLFKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFLEQMNKAYKRLFL 312          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: GDC_RAT (Graves disease carrier protein (Fragment) OS=Rattus norvegicus GN=Slc25a16 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.166e-12
Identity = 50/158 (31.65%), Postives = 80/158 (50.63%), Query Frame = -2
Query:  289 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEE-GLLALWKGLLPRLMRIPP 759
            V P + VK+ LQ          K+ G +   R + ++EG  GL+ G    ++R     A  F A   +   +  K    G V +     ++G ++ TA  +CT P DVV+ RL  Q +G  E  Y G++HA +TIYA+E G L  ++GL+P ++ + P
Sbjct:   54 VAPLDRVKVLLQAHN----HHYKHLGVLSPLRAVPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKLGVSGHVHRLMAGSMAGKMSMTA-VICTYPLDVVRVRLAFQVKG--EHTYSGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAP 204          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: CMC2_HUMAN (Calcium-binding mitochondrial carrier protein Aralar2 OS=Homo sapiens GN=SLC25A13 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.166e-12
Identity = 51/155 (32.90%), Postives = 73/155 (47.10%), Query Frame = -2
Query:  289 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPP 753
            P E+VKIRLQ    ++       GP   A  ++R+ G FG++ GA    +R+    A  F            +   DG+V  P   +++G +AG        P DV+KTRL   +R G +  Y G++   R I  EEG  ALWKG   R+ R  P
Sbjct:  448 PLEIVKIRLQVAGEITT------GPRVSALSVVRDLGFFGIYKGAKACFLRDIPFSAIYFPCYAHVKASFANE---DGQV-SPGSLLLAGAIAGMPAASLVTPADVIKTRLQVAARAG-QTTYSGVIDCFRKILREEGPKALWKGAGARVFRSSP 591          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: UCP5_MOUSE (Brain mitochondrial carrier protein 1 OS=Mus musculus GN=Slc25a14 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.747e-12
Identity = 46/156 (29.49%), Postives = 77/156 (49.36%), Query Frame = -2
Query:  298 PFEVVKIRLQQQRGLSLEL----LKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMR 753
            P ++ K RLQ Q G S+++    +KY+G  H    I +EEG+  L++G AP ++R  +          +   L  ++ E +  ++    +MI G ++G        P DV+K R+ AQ    G L    M+ +   IY +EG   LW+G++P   R
Sbjct:   60 PVDLTKTRLQVQ-GQSIDVRFKEIKYRGMFHALFRIYKEEGILALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLI----NMICGVVSGVISSTIANPTDVLKIRMQAQ----GSLFQGSMIGSFIDIYQQEGTRGLWRGVVPTAQR 206          

HSP 2 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 54/171 (31.58%), Postives = 82/171 (47.95%), Query Frame = -2
Query:  253 PFEVVKIRLQQQRGLSLELLKYKGPIHCARM-IIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPW--QSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELK-YKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 753
            P +V+KIR+Q Q  L      ++G +  + + I ++EG  GLW G  PT  R     AA+          + KKH     +L        +S F  G AG + + P DVV+TR+M Q    G +  YKG +  I  ++  EG  AL+KG  P  +R+ P   I +   +Q+
Sbjct:  161 PTDVLKIRMQAQGSL------FQGSMIGSFIDIYQQEGTRGLWRGVVPTAQR-----AAIVVGVELPVYDITKKHLIVSGMLGDTILTHFVSSFTCGLAGALASNPVDVVRTRMMNQRAIVGHVDLYKGTLDGILKMWKHEGFFALYKGFWPNWLRLGPWNIIFFITYEQL 320          
The following BLAST results are available for this feature:
BLAST of CN185546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
TPC_MACFA3.956e-1231.28Mitochondrial thiamine pyrophosphate carrier OS=Ma... [more]
RIM2_YEAST3.956e-1227.91Mitochondrial carrier protein RIM2 OS=Saccharomyce... [more]
M2OM_MOUSE3.956e-1229.61Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
YD1K_SCHPO5.166e-1231.40Uncharacterized mitochondrial carrier C4G9.20c OS=... [more]
TPC1_EMENI5.166e-1231.40Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
MCFB_DICDI5.166e-1230.77Mitochondrial substrate carrier family protein B O... [more]
M2OM_HUMAN5.166e-1229.05Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
GDC_RAT5.166e-1231.65Graves disease carrier protein (Fragment) OS=Rattu... [more]
CMC2_HUMAN5.166e-1232.90Calcium-binding mitochondrial carrier protein Aral... [more]
UCP5_MOUSE6.747e-1229.49Brain mitochondrial carrier protein 1 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185546 ID=CN185546; Name=CN185546; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTGAGAAAATCTGGCAACTACCTACATTTTCCCCTTCC
TAGGCATGGCAAATTACTGATTCGGTCTACAAAAACTGGTGTTCAATCAA
AGAATCCTTAAGAACTCAAAAAGAAATGCTGAAGCAATTCATAGCTTCAT
GCTAGCAATGGAAGTATGTAACTAAAATGTAGAATAGGCAAAACAATAAA
ATAGTACCTATAAGGGTGCATTGCGAAGATATCTCCTCTCATAAAAACCA
GTCACTTGGTCAGCCACAGCCCACATAATGGCCTGGCCTGGCGGGATCCT
CATGAGACGGGGCAGCAGTCCTTTCCACAAGGCAAGAAGCCCCTCCTCAG
CATATATTGTTCTGATTGCATGGACCATGCCTTTGTACTTTAACTCACCC
CCACCTCGACTCTGGGCCATCAGCCTTGTCTTGACAACATCAAAAGGGCC
AGTGCATACTGGACCTGCTGTTCCTGCAAGGAATCCCGATATCATGGACT
GCCACGGTTGGAGGACCTTCCCATCACCTTCATGTTTCTTCCACAAGAGT
ACATCAAAAGCATTTTTAGCCGTAAACATGGCAGCTTGGTTTGTCCCATT
GCGCATAACAGTTGGGGCAGCCCCTGCCCAGAGTCCAAAGAGTCCTTCCT
CACGGATGATCATACGAGCACAGTGTATAGGACCCTTGTACTTTAGAAGC
TCAAGACTCAAACCTCTCTGCTGTTGTAGTCTAATTTTCACCACCTCAAA
AGGAGTAACA
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