CN185546

Overview
NameCN185546
Unique NameCN185546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10630 contig Csv1_Contig10630:554..1313. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: S2539_DANRE (Solute carrier family 25 member 39 OS=Danio rerio GN=SLC25A39 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11
Identity = 54/199 (27.14%), Postives = 93/199 (46.73%), Query Frame = -2
Query:  217 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHE-GDGKVLQPWQ--------SMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMV---------HAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRYLRNA 759
            ++P E+V+ ++Q +R      L+Y   + C R  + ++G   LW G  PTV+R+             F  L W  +E    ++ + ++        S  +G ++G    V T PFDVVKTR   Q    GE++  G V         + +R I+ + G   L+ G LPR++++ P  A+M +  +    F++ R L  A
Sbjct:  177 ISPLELVRTKMQSRR------LQYSELMVCIRSSVAQDGWLSLWRGWGPTVLRDVP-----------FSALYWFNYELVKAQLCEHYRTPQASFTISFTAGAVSGAIAAVLTLPFDVVKTRRQIQL---GEMEALGAVSMKKPSSTWNMMRNIWIDMGYKGLFAGFLPRVIKVAPACAVMISTYEFGKTFFQERNLHQA 355          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: ADT_SCHPO (ADP,ATP carrier protein OS=Schizosaccharomyces pombe GN=anc1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11
Identity = 50/171 (29.24%), Postives = 77/171 (45.03%), Query Frame = -2
Query:  259 PFEVVKIRLQQQRGLSLE---LLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRG---GGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVAD 753
            P E VK+ +Q Q  +        +YKG   C +    EEG+  LW G    V+R    QA  F  K+ F  +   K E DG       ++ SG  AG A  +     D  +TRL   ++    GGE ++ G+V   R  Y  +GL  L++G  P ++ I   + + + + D
Sbjct:   47 PIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQALNFAFKDKFKKMFGYKKERDGYAKWFAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYD 217          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TPC1_YARLI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Yarrowia lipolytica GN=TPC1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 50/184 (27.17%), Postives = 83/184 (45.11%), Query Frame = -2
Query:  229 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLL--WKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELK-YKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWA----VADQVTGFYERRY 759
            + P +VVKIRLQ Q+  S     Y+G     + I+R+EG+  LW G  P  +      A  F   +  + ++  + +     K+    QS I+G  AG    + T PFD+ +T   AQ      +K Y  +    + IY  EG L  ++G+   ++ I P   + +A    V D +  F  + +
Sbjct:   31 IAPLDVVKIRLQLQKDGSRY---YRGIFQTMQQIVRDEGVTALWKGNIPAELLYVFYGATQFVTYHHVNQVINAYNETAEKWKISSGAQSFIAGATAGAGATIATYPFDLFRTLFAAQGAKNCNVKNYTSLFQTFKLIYKTEGPLGFFRGVSSSIISIAPYMGLFFASYGRVKDSLDAFSNKHH 211          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TPC1_SCLS1 (Mitochondrial thiamine pyrophosphate carrier 1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tpc1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 54/173 (31.21%), Postives = 80/173 (46.24%), Query Frame = -2
Query:  268 VTPFEVVKIRLQQQRGLSLELLK---------YKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWA 759
            + P +VVKIRLQ Q   + + L          YKG +   + I REEGL  LW G  P  +   +  A  FT   +  + L +   G+ ++    +S I+G  AG      T P D+++TR  AQ   G E  Y  +  +IR I   EG    ++GL   + +I P   I +A
Sbjct:   32 IAPLDVVKIRLQLQSHSASDPLSHRDLRGSLIYKGTLPTIKRIFREEGLSALWKGNVPAELMYVSYSAIQFTTYRSVTLAL-QDTVGEHRMPAAAESFIAGASAGAVATTATYPLDLLRTRFAAQ---GVERIYTSLRASIRDIAVNEGPRGFFQGLGAGVGQIIPYMGIFFA 200          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: TPC1_BOTFB (Mitochondrial thiamine pyrophosphate carrier 1 OS=Botryotinia fuckeliana (strain B05.10) GN=tpc1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 55/178 (30.90%), Postives = 82/178 (46.07%), Query Frame = -2
Query:  253 VTPFEVVKIRLQQQRGLSLELLK---------YKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 759
            + P +VVKIRLQ Q   + + L          YKG I   + I REEGL  LW G  P  +   +  A  FT   +  + L +   G+ ++    +S I+G  AG      T P D+++TR  AQ   G E  Y  +  +IR I   EG    ++GL   + +I P   I +A  + +
Sbjct:   32 IAPLDVVKIRLQLQSHSASDPLSQRDLRGSPIYKGTIPTIKRIFREEGLAALWKGNVPAELMYVSYSAIQFTTYRSVTLGL-QDAFGEHRLPAAAESFIAGASAGAVATTATYPLDLLRTRFAAQ---GIERVYTSLRSSIRDIAISEGPRGFFQGLGAGVGQIVPYMGIFFATYESL 205          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: CMC1_PONAB (Calcium-binding mitochondrial carrier protein Aralar1 OS=Pongo abelii GN=SLC25A12 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 50/155 (32.26%), Postives = 73/155 (47.10%), Query Frame = -2
Query:  289 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPP 753
            P E+VKIRLQ    ++       GP   A  ++R+ G+FGL+ GA    +R+    A  F       +LL  ++   G +      + +G +AG        P DV+KTRL   +R G +  Y G++   R I  EEG  A WKG   R+ R  P
Sbjct:  446 PLEIVKIRLQVAGEITT------GPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGL----NLLAAGAMAGVPAASLVTPADVIKTRLQVAARAG-QTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSP 589          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: CMC1_HUMAN (Calcium-binding mitochondrial carrier protein Aralar1 OS=Homo sapiens GN=SLC25A12 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 50/155 (32.26%), Postives = 73/155 (47.10%), Query Frame = -2
Query:  289 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPP 753
            P E+VKIRLQ    ++       GP   A  ++R+ G+FGL+ GA    +R+    A  F       +LL  ++   G +      + +G +AG        P DV+KTRL   +R G +  Y G++   R I  EEG  A WKG   R+ R  P
Sbjct:  446 PLEIVKIRLQVAGEITT------GPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGL----NLLAAGAMAGVPAASLVTPADVIKTRLQVAARAG-QTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSP 589          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: S2540_HUMAN (Solute carrier family 25 member 40 OS=Homo sapiens GN=SLC25A40 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 54/187 (28.88%), Postives = 93/187 (49.73%), Query Frame = -2
Query:  223 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMI---SGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHA-----IRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRYLR 759
            ++P E+++ ++Q ++   +EL ++          + E+G   LW G APTV+R+       F+A   ++  + KK   +   L     MI   SG L+G+   V T PFDVVKT+   Q       K    +H      ++ I A+ G   L+ GL+PRL++I P  AIM +  +    F++++ +R
Sbjct:  159 ISPLELIRTKMQSKKFSYVELHRF------VSKKVSEDGWISLWRGWAPTVLRD-----VPFSAMYWYNYEILKKWLCEKSGLYEPTFMINFTSGALSGSFAAVATLPFDVVKTQKQTQLWTYESHKISMPLHMSTWIIMKNIVAKNGFSGLFSGLIPRLIKIAPACAIMISTYEFGKAFFQKQNVR 334          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: MFRN1_HUMAN (Mitoferrin-1 OS=Homo sapiens GN=SLC25A37 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 55/185 (29.73%), Postives = 79/185 (42.70%), Query Frame = -2
Query:  220 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGEL-----KYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRYLRN 759
            + P EVVK RLQ          +++  I C R + R EGL   +      +  N   Q+  F     ++ L  ++     +   P   +ISG LAG      T P DV KT L  Q      L     +  GM +A RT+Y   GL   +KG+  R++   P  AI W+V +    F  +R L N
Sbjct:  161 MNPAEVVKQRLQMYNS------QHRSAISCIRTVWRTEGLGAFYRSYTTQLTMNIPFQSIHFIT---YEFL--QEQVNPHRTYNPQSHIISGGLAGALAAAATTPLDVCKTLLNTQENVALSLANISGRLSGMANAFRTVYQLNGLAGYFKGIQARVIYQMPSTAISWSVYEFFKYFLTKRQLEN 334          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: UCPB_DICDI (Mitochondrial substrate carrier family protein ucpB OS=Dictyostelium discoideum GN=ucpB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 51/161 (31.68%), Postives = 75/161 (46.58%), Query Frame = -2
Query:  289 TPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQP---WQSMISGFLAGTAGPVCTGPFDVVKTRLMAQ--SRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPP 756
            +P +++K+R+Q     S + +KY       + II +EG+ GLW G  PT     T +AA+ TA         K    D  ++Q       ++S   AG    + T P D+VKTR+M Q     G  L YK      +  +  EG+  L+KG LP   RI P
Sbjct:  122 SPTDLIKVRMQA----SSKGVKYDSISSAFKEIIAKEGIKGLWKGVGPT-----TQRAALLTASQIPSYDHIKHMILDHGIIQVDGLQVHIVSSIFAGLIASITTSPVDLVKTRIMNQPFDSNGVGLIYKSSYDCFKKTFQSEGISGLYKGFLPNWFRIGP 273          
The following BLAST results are available for this feature:
BLAST of CN185546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
S2539_DANRE1.151e-1127.14Solute carrier family 25 member 39 OS=Danio rerio ... [more]
ADT_SCHPO1.151e-1129.24ADP,ATP carrier protein OS=Schizosaccharomyces pom... [more]
TPC1_YARLI1.503e-1127.17Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_SCLS11.503e-1131.21Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_BOTFB1.503e-1130.90Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
CMC1_PONAB1.503e-1132.26Calcium-binding mitochondrial carrier protein Aral... [more]
CMC1_HUMAN1.503e-1132.26Calcium-binding mitochondrial carrier protein Aral... [more]
S2540_HUMAN1.963e-1128.88Solute carrier family 25 member 40 OS=Homo sapiens... [more]
MFRN1_HUMAN1.963e-1129.73Mitoferrin-1 OS=Homo sapiens GN=SLC25A37 PE=1 SV=2[more]
UCPB_DICDI2.564e-1131.68Mitochondrial substrate carrier family protein ucp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185546 ID=CN185546; Name=CN185546; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTGAGAAAATCTGGCAACTACCTACATTTTCCCCTTCC
TAGGCATGGCAAATTACTGATTCGGTCTACAAAAACTGGTGTTCAATCAA
AGAATCCTTAAGAACTCAAAAAGAAATGCTGAAGCAATTCATAGCTTCAT
GCTAGCAATGGAAGTATGTAACTAAAATGTAGAATAGGCAAAACAATAAA
ATAGTACCTATAAGGGTGCATTGCGAAGATATCTCCTCTCATAAAAACCA
GTCACTTGGTCAGCCACAGCCCACATAATGGCCTGGCCTGGCGGGATCCT
CATGAGACGGGGCAGCAGTCCTTTCCACAAGGCAAGAAGCCCCTCCTCAG
CATATATTGTTCTGATTGCATGGACCATGCCTTTGTACTTTAACTCACCC
CCACCTCGACTCTGGGCCATCAGCCTTGTCTTGACAACATCAAAAGGGCC
AGTGCATACTGGACCTGCTGTTCCTGCAAGGAATCCCGATATCATGGACT
GCCACGGTTGGAGGACCTTCCCATCACCTTCATGTTTCTTCCACAAGAGT
ACATCAAAAGCATTTTTAGCCGTAAACATGGCAGCTTGGTTTGTCCCATT
GCGCATAACAGTTGGGGCAGCCCCTGCCCAGAGTCCAAAGAGTCCTTCCT
CACGGATGATCATACGAGCACAGTGTATAGGACCCTTGTACTTTAGAAGC
TCAAGACTCAAACCTCTCTGCTGTTGTAGTCTAATTTTCACCACCTCAAA
AGGAGTAACA
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