CN185546

Overview
NameCN185546
Unique NameCN185546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10630 contig Csv1_Contig10630:554..1313. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: UCP2_CYPCA (Mitochondrial uncoupling protein 2 OS=Cyprinus carpio GN=ucp2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 51/168 (30.36%), Postives = 72/168 (42.86%), Query Frame = -2
Query:  253 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNG-TNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 753
            P +VVK+R Q Q        +Y G +   R I +EEG  GLW G  P + RN   N   + T     D LL      D           S F AG    V   P DVVKTR M  + G    +Y   ++    +  +EG  A +KG +P  +R+     +M+   +Q+
Sbjct:  137 PTDVVKVRFQAQNSAGANK-RYHGTMDAYRTIAKEEGFRGLWKGTGPNITRNAIVNCTELVTYDLIKDALLKSSLMTDDLPCH----FTSAFGAGFCTTVIASPVDVVKTRYMNSAPG----QYCSALNCAVAMLTKEGPKAFYKGFMPSFLRLGSWNVVMFVTYEQL 295          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: CMC_DROME (Calcium-binding mitochondrial carrier protein Aralar1 OS=Drosophila melanogaster GN=aralar1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 53/155 (34.19%), Postives = 73/155 (47.10%), Query Frame = -2
Query:  289 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPP 753
            P E+VKIRLQ    ++       G    A  ++RE GLFGL+ GA   ++R+    A  F        ++  K   DG    P   + +G +AG        P DV+KTRL   +R G +  Y G+  A + I AEEG  A WKG   R+ R  P
Sbjct:  461 PLEIVKIRLQVAGEIA------SGSKIRAWSVVRELGLFGLYKGARACLLRDVPFSAIYFPTYAHTKAMMADK---DG-YNHPLTLLAAGAIAGVPAASLVTPADVIKTRLQVVARSG-QTTYTGVWDATKKIMAEEGPRAFWKGTAARVFRSSP 604          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: YEA6_YEAST (Probable mitochondrial carrier YEL006W OS=Saccharomyces cerevisiae GN=YEL006W PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 54/157 (34.39%), Postives = 75/157 (47.77%), Query Frame = -2
Query:  301 VTPFEVVKIRLQQQ--RGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFL-AGTAGPVCTGPFDVVKTRLMAQSR-GGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLM 759
            V PF+V K RLQ Q  + ++ +   YKG       I ++EG  GL+ G  PTV+         F+  +       +K+  D     P+ S  S  + AG    V T P  VVKTRLM Q+  G     YKG +   R I  +EG  AL+ GL+P L+
Sbjct:   56 VCPFDVAKTRLQAQGLQNMTHQSQHYKGFFGTFATIFKDEGAAGLYKGLQPTVLGYIPTLMIYFSVYD-----FCRKYSVDIFPHSPFLSNASSAITAGAISTVATNPIWVVKTRLMLQTGIGKYSTHYKGTIDTFRKIIQQEGAKALYAGLVPALL 207          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: SAMC_BOVIN (S-adenosylmethionine mitochondrial carrier protein OS=Bos taurus GN=SLC25A26 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 50/171 (29.24%), Postives = 74/171 (43.27%), Query Frame = -2
Query:  244 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLL-WKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGF 753
            P EVVK R Q             G  H    I+ +EG+ GL+ G   TV+R        F    +   L  W++     +V+  WQ+ + G  AG      T P DV KTR+M  ++ G       ++ A+  ++  +GL  L+ G+ PR+  I  G  I   V DQ   F
Sbjct:  108 PSEVVKQRAQVSAS--------SGTFHIFSNILCQEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQD----RVVDSWQAAVCGAFAGGFAAAVTTPLDVAKTRIML-AKAGSSTASGNILSALHAVWRTQGLSGLFAGVFPRMAAISLGGFIFLGVYDQTRSF 265          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: MFRN1_RAT (Mitoferrin-1 OS=Rattus norvegicus GN=Slc25a37 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 56/188 (29.79%), Postives = 81/188 (43.09%), Query Frame = -2
Query:  211 VTPFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRL-----MAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRYLRNAPL 759
            + P EVVK RLQ          +++  + C R + R EGL   +      +  N   Q+  F     ++ L  ++     +   P   +ISG LAG      T P DV KT L     MA S      +  GM +A RT+Y   GL   +KG+  R++   P  AI W+V +    F  +R L N  L
Sbjct:  161 MNPAEVVKQRLQMYNS------QHQSALSCIRTVWRTEGLGAFYRSYTTQLTMNIPFQSIHFIT---YEFL--QEQVNPRRDYNPQSHIISGGLAGALAAAATTPLDVCKTLLNTQENMALSLANVSGRLSGMANAFRTVYQLNGLAGYFKGIQARVIYQMPSTAISWSVYEFFKYFLTKRQLENRTL 337          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: ADT_KLULA (ADP,ATP carrier protein OS=Kluyveromyces lactis GN=AAC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 54/189 (28.57%), Postives = 88/189 (46.56%), Query Frame = -2
Query:  226 PFEVVKIRLQQQRGL----SLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLL-WKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRG---GGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQ-----VTGFYERRYL 753
            P E VK+ +Q Q  +    SL+  +Y G + C +    +EG+   W G    V+R    QA  F  K+    +  +KK EG  K      ++ SG LAG    +     D  +TRL A S+    GGE ++ G+V   +   A +G+  L++G LP ++ I   + + + + D      +TG  E  +L
Sbjct:   30 PIERVKLLIQNQDEMIKQGSLDR-RYTGIVECFKRTAADEGVASFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKKEEGYAKWFAG--NLASGGLAGGLSLLFVYSLDYARTRLAADSKSAKKGGERQFNGLVDVYKKTLASDGVAGLYRGFLPSVVGIVVYRGLYFGLYDSLKPLLLTGSLENSFL 215          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: UCP3_PIG (Mitochondrial uncoupling protein 3 OS=Sus scrofa GN=UCP3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 56/183 (30.60%), Postives = 81/183 (44.26%), Query Frame = -2
Query:  214 PFEVVKIRLQQQ-RGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNG-TNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV-TGFYERRYLRNAP 753
            P +VVK+R Q           KY G +   R I REEG+ GLW G  P + RN   N A M T    +DV+  K  +            +S F AG    V   P DVVKTR M    G    +Y+  +  +  +  +EG  A +KG  P  +R+     +M+   +Q+     + + LR +P
Sbjct:  133 PTDVVKVRFQASIHAGPRSNRKYSGTMDAYRTIAREEGVRGLWKGILPNITRNAIVNCAEMVT----YDVIKEKVLDYHLLTDNLPCHFVSAFGAGFCATVVASPVDVVKTRYMNSPPG----QYQNPLDCMLKMVTQEGPTAFYKGFTPSFLRLGSWNVVMFVSYEQLKRALMKVQMLRESP 307          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: SAMC_XENTR (S-adenosylmethionine mitochondrial carrier protein OS=Xenopus tropicalis GN=slc25a26 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 42/136 (30.88%), Postives = 67/136 (49.26%), Query Frame = -2
Query:  253 IREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAF-DVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 657
            +R+EG+ GL+ G   TV+R        F    +  D+  WK+    G+ +  WQS + G  AG      T P DV KTR+M    G G +    ++ A+  I+  +G++ L+ G++PR+  I  G  I     D+V
Sbjct:  131 LRQEGIKGLYRGYKSTVLREIPFSLVQFPLWESLKDLWSWKQ----GRAVDSWQSAVCGAFAGGFAAALTTPLDVAKTRIMLAKAGSG-VASGNVLFALHEIWRTQGIMGLFAGVIPRMTAISLGGFIFLGAYDKV 261          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: S2540_DANRE (Solute carrier family 25 member 40 OS=Danio rerio GN=slc25a40 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11
Identity = 59/210 (28.10%), Postives = 92/210 (43.81%), Query Frame = -2
Query:  214 VTPFEVVKIRLQQQR-------------GLSLEL---------LKYKGPIHCARM------IIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRYLRNAP 759
            VTP +VVKIRLQ Q+             GL   +         + YK P H +        IIR EG+  LW+G  PT++         FT  +    LL K   GD   L P   + +G +A         P ++++T++ ++ +      Y+ M   IR+    EGL +LW+G  P L+R  P  A+ W   ++   +  +RY  + P
Sbjct:   34 VTPLDVVKIRLQAQKNPFPKGKCFVYCNGLMDHICVCENGNTKVWYKAPGHFSGTLDAFLKIIRMEGIRSLWSGLPPTLIMAVPATVIYFTCYDQLFALL-KLKMGDRSDLAP---LFAGAIARVGSATVISPLELIRTKMQSEKQS-----YREMSAVIRSALKNEGLRSLWRGWGPTLLRDVPFSAMYWFNYEKGKWWLCKRYSCSEP 234          
BLAST of CN185546 vs. ExPASy Swiss-Prot
Match: CMC3_CAEEL (Probable calcium-binding mitochondrial carrier F17E5.2 OS=Caenorhabditis elegans GN=F17E5.2 PE=2 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11
Identity = 46/175 (26.29%), Postives = 76/175 (43.43%), Query Frame = -2
Query:  229 PFEVVKIRLQQQRGLSLELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRY 753
            PF+ +K+ LQ     + +L    G + C  ++  E G+   W G    V++     A  F   +   +  W +    G  L   + +++G  AG        P +V+KTRL  +  G  +   KGM H    +Y +EG+   +KG LP L+ I P   I   V + +   Y + Y
Sbjct:  264 PFDRIKVYLQVNSTKTNKL----GVVSCVHLLHAEGGIKSFWRGNGINVIKIAPESAMKFMCYD--QIKRWMQEYKGGAELSTIERLLAGSSAGAISQTAIYPMEVMKTRLALRRTGQLD---KGMFHFAHKMYTKEGIKCFYKGYLPNLLGIIPYAGIDLTVYESLKSMYTKYY 429          
The following BLAST results are available for this feature:
BLAST of CN185546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
UCP2_CYPCA2.564e-1130.36Mitochondrial uncoupling protein 2 OS=Cyprinus car... [more]
CMC_DROME2.564e-1134.19Calcium-binding mitochondrial carrier protein Aral... [more]
YEA6_YEAST3.349e-1134.39Probable mitochondrial carrier YEL006W OS=Saccharo... [more]
SAMC_BOVIN3.349e-1129.24S-adenosylmethionine mitochondrial carrier protein... [more]
MFRN1_RAT3.349e-1129.79Mitoferrin-1 OS=Rattus norvegicus GN=Slc25a37 PE=2... [more]
ADT_KLULA3.349e-1128.57ADP,ATP carrier protein OS=Kluyveromyces lactis GN... [more]
UCP3_PIG4.373e-1130.60Mitochondrial uncoupling protein 3 OS=Sus scrofa G... [more]
SAMC_XENTR4.373e-1130.88S-adenosylmethionine mitochondrial carrier protein... [more]
S2540_DANRE5.712e-1128.10Solute carrier family 25 member 40 OS=Danio rerio ... [more]
CMC3_CAEEL5.712e-1126.29Probable calcium-binding mitochondrial carrier F17... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185546 ID=CN185546; Name=CN185546; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTGAGAAAATCTGGCAACTACCTACATTTTCCCCTTCC
TAGGCATGGCAAATTACTGATTCGGTCTACAAAAACTGGTGTTCAATCAA
AGAATCCTTAAGAACTCAAAAAGAAATGCTGAAGCAATTCATAGCTTCAT
GCTAGCAATGGAAGTATGTAACTAAAATGTAGAATAGGCAAAACAATAAA
ATAGTACCTATAAGGGTGCATTGCGAAGATATCTCCTCTCATAAAAACCA
GTCACTTGGTCAGCCACAGCCCACATAATGGCCTGGCCTGGCGGGATCCT
CATGAGACGGGGCAGCAGTCCTTTCCACAAGGCAAGAAGCCCCTCCTCAG
CATATATTGTTCTGATTGCATGGACCATGCCTTTGTACTTTAACTCACCC
CCACCTCGACTCTGGGCCATCAGCCTTGTCTTGACAACATCAAAAGGGCC
AGTGCATACTGGACCTGCTGTTCCTGCAAGGAATCCCGATATCATGGACT
GCCACGGTTGGAGGACCTTCCCATCACCTTCATGTTTCTTCCACAAGAGT
ACATCAAAAGCATTTTTAGCCGTAAACATGGCAGCTTGGTTTGTCCCATT
GCGCATAACAGTTGGGGCAGCCCCTGCCCAGAGTCCAAAGAGTCCTTCCT
CACGGATGATCATACGAGCACAGTGTATAGGACCCTTGTACTTTAGAAGC
TCAAGACTCAAACCTCTCTGCTGTTGTAGTCTAATTTTCACCACCTCAAA
AGGAGTAACA
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