CN185545

Overview
NameCN185545
Unique NameCN185545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2146 contig Csv1_Contig2146:115..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK15_ARATH (SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.382e-40
Identity = 84/146 (57.53%), Postives = 105/146 (71.92%), Query Frame = -3 
Query:  219 VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGD--------KKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEE-VRRENQWAFE 626
            VA + Q +KH++EDDC    IPL NVT  ILS V+EYCKKHV+    D        KK D   + +L  WDA+F+K +D  T+F LILAANYLN++GLL LTCQTVAD IK KTPEE+R+ FNI+NDF+ +EEEE +R+EN WAFE
Sbjct:   22 VARKLQIVKHLLEDDCVINEIPLQNVTGNILSIVLEYCKKHVDDVVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167
[Close]
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = -3 
Query:  219 VALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
[Close]
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = -3 
Query:  219 VALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
[Close]
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = -3 
Query:  219 VALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
[Close]
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = -3 
Query:  219 VALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
[Close]
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = -3 
Query:  219 VALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
[Close]
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = -3 
Query:  219 VALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
[Close]
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = -3 
Query:  219 VALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
[Close]
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = -3 
Query:  219 VALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
[Close]
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = -3 
Query:  219 VALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE--DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C  H +     + D+   +  DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   20 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
The following BLAST results are available for this feature:
BLAST of CN185545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ASK15_ARATH5.382e-4057.53SKP1-like protein 15 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_XENLA1.199e-3957.34S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT1.199e-3957.34S-phase kinase-associated protein 1 OS=Rattus norv... [more]
SKP1_PONAB1.199e-3957.34S-phase kinase-associated protein 1 OS=Pongo abeli... [more]
SKP1_MOUSE1.199e-3957.34S-phase kinase-associated protein 1 OS=Mus musculu... [more]
SKP1_MACFA1.199e-3957.34S-phase kinase-associated protein 1 OS=Macaca fasc... [more]
SKP1_HUMAN1.199e-3957.34S-phase kinase-associated protein 1 OS=Homo sapien... [more]
SKP1_CHICK1.199e-3957.34S-phase kinase-associated protein 1 OS=Gallus gall... [more]
SKP1_CAVPO1.199e-3957.34S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN1.199e-3957.34S-phase kinase-associated protein 1 OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185545 ID=CN185545; Name=CN185545; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTAGACAAGAAATGAAGATATAATGCAATAGACAA
GGGTTCAATGACATTTATATCGAGCAGCATTCACAGGTTCACGACAAAAG
GAAATGTTGATGTTCAATACTAGACACCTACTGGCAACATACTAAAAGAC
CACTATCATTATAACCACATTCCTATCACAAATATTAATGACCGAGCCTT
CATCACTTCAGTCCTTCACTCGAATGCCCATTGGTTCTCTCTCCGAACCT
CCTCTTCTTCATCGGGAGAGAAGTCATTCTTGATGTTGAAGGTCTTGCGG
ATCTCCTCTGGAGTCTTCCCCTTGATCATGTCTGCAACAGTTTGGCAGGT
CAAGTCCAGCAAACCCTTAATGTTCAGGTAATTGGCTGCCAAGATTAGGT
CAAAGAGGGTATTCTGATCAACCTTGACGAAGTCTGCATCCCAGGTCTTG
AGATCATCCTCGGTCGACTTGTCGTCCTTCTTGTCCCCTGACCCAGCCTC
AACGTGCTTCTTGCAGTACTCGATAACCTTCGAGAGAATCGTGCTCGTCA
CATTCGGCAGCGGGATTACGGTGTCGGCGCAGTCGTCCTCCACCATGTGC
TTGATTGTCTGCGACTCGAGGGCCACCGTCT
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