CN185545

Overview
NameCN185545
Unique NameCN185545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2146 contig Csv1_Contig2146:115..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.045e-39
Identity = 82/136 (60.29%), Postives = 98/136 (72.06%), Query Frame = -3
Query:  219 ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKH-VEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 623
            A + QTI HM EDDC D  IPLP VT  IL  VIEYC KH V+A +        +++DLK WD +F++  Q+T+FDLI+AANYLNIK LLDL CQTVADMIK  T E  RK FNI+ND++ +EEE VRRENQW FE
Sbjct:   23 ACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKHHVDAAN------PCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.556e-39
Identity = 78/130 (60.00%), Postives = 98/130 (75.38%), Query Frame = -3
Query:  219 IKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKH-VEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 605
            I HM E+DC D  IPLPNVT  IL+ VIEYC KH V+A +        ++DDLK WD +F++ D +T+FDLI AANYLNIK L DL CQTVA++IKG TPE+IR+ FNI+ND +P+EE  +RREN+WAFE
Sbjct:   30 IAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKHHVDAAN------PCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK16_ARATH (SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.122e-37
Identity = 76/146 (52.05%), Postives = 103/146 (70.55%), Query Frame = -3
Query:  219 VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKD---------DKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            VA + + I HM++DDCAD  IPL NVT  IL+ VIEYCKKHV     D  D         ++  +++L+TWDA+F+K  D  T+  LILA NYLN++ LL LTCQTVAD +K  +PEE+R+ FNI+ND++P+EE+ +R+EN WAFE
Sbjct:   22 VARKLKVIAHMIDDDCADKAIPLENVTGNILALVIEYCKKHVLDDVDDSDDSTEATSENVNEEAKNELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLLGLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFE 167          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.241e-36
Identity = 85/169 (50.30%), Postives = 106/169 (62.72%), Query Frame = -3
Query:  219 VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVE-----------AGSGDKK--------DD----KSTEDD---------LKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            VA + Q + H++EDDCA   IP+PNVT  IL+KVIEYCKKHVE           +  GDK         DD    +STE D         L  WDA F+K  D  T+FD+ILAANYLN++GL DL  +T+AD IK  TPEE+R+ FNI+NDF+P+EEE +R EN W FE
Sbjct:   22 VARKLQIVGHIIEDDCATNKIPIPNVTGEILAKVIEYCKKHVEDDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMKDFDIKTIFDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.241e-36
Identity = 76/136 (55.88%), Postives = 99/136 (72.79%), Query Frame = -3
Query:  222 VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFV-KVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAF 626
            VA +   I HM+ED+CA   IPL NVT  ILSK+IEY K HV   S ++ +D+  + +L +WDA F+ K+D  T+F +ILAANYLN +GLL    QTVAD IK KTPEE+R+ FNI+NDF+P+EEEE+R+EN W F
Sbjct:   22 VARKFLIIVHMMEDNCAGEAIPLENVTGDILSKIIEYAKMHVNEPS-EEDEDEEAKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.715e-36
Identity = 79/142 (55.63%), Postives = 101/142 (71.13%), Query Frame = -3
Query:  219 VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNT-LFDLILAANYLNIKGLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 626
            VA +S  I HMVED CA  VIPL NVTS IL  VI+YC+KHV++           E+DLK WDADF+K  + T LFD+++AANYLNI+ LLDLTC+TV     AD++ GKTP+EIR  FNI+ND + +E  ++R ENQWAF+
Sbjct:   21 VARKSIAINHMVEDGCATDVIPLRNVTSKILKIVIDYCEKHVKS---------KEEEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.528e-34
Identity = 74/141 (52.48%), Postives = 105/141 (74.47%), Query Frame = -3
Query:  225 VALESQTIKHMVEDDCADTV-IPLPNVTSTILSKVIEYCKKH---VEAGSGDKKD---DKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 626
            +A  S  IK+M+ED     V IPLPNV+S +L KV+E+C+ H   + +G+ ++ D    KST  D+  WD  F+ VDQ  LF+++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTFNI NDF+P+EEE++R+EN+WA
Sbjct:   20 IAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHKNDLYSGTEEESDIRLKKST--DIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.861e-33
Identity = 65/123 (52.85%), Postives = 95/123 (77.24%), Query Frame = -3
Query:  225 EDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 590
            ++D  + V+P+PNV S++L KVIE+ + H ++   D+ DD S +   + +WD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDF+P+EE  +RREN+WA
Sbjct:   69 DEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.879e-33
Identity = 71/136 (52.21%), Postives = 97/136 (71.32%), Query Frame = -3
Query:  219 ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKH-VEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 623
            A + QTI HM+E +C D VI +  +TS IL  VIEYC KH V+A +        ++DDL+ WD +F++ D++T+F L  AAN+LN K LL L  QTVADMIKG TP+++R+ FNI+ND +P+EE  +RREN+WAFE
Sbjct:   23 ARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAAN------PCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 69/136 (50.74%), Postives = 95/136 (69.85%), Query Frame = -3
Query:  222 VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAF 626
            VA + Q + HM++DDCAD  I L NVT  IL+ +IEYCKKHV        DD   +++  TWDA+FVK +D +TLF L+ AA+YL + GL +L  Q +AD    KT  EIR+ FNI+ND++P+EEEE+R++N+WAF
Sbjct:   22 VARKMQMVAHMIDDDCADKAIRLQNVTGKILAIIIEYCKKHV--------DDVEAKNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149          
The following BLAST results are available for this feature:
BLAST of CN185545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ASK10_ARATH2.045e-3960.29SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
ASK9_ARATH4.556e-3960.00SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK16_ARATH1.122e-3752.05SKP1-like protein 16 OS=Arabidopsis thaliana GN=AS... [more]
ASK19_ARATH1.241e-3650.30SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK18_ARATH1.241e-3655.88SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
ASK5_ARATH4.715e-3655.63SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
SKP1_SCHPO7.528e-3452.48Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
SKP1_YEAST2.861e-3352.85Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]
ASK8_ARATH4.879e-3352.21SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]
ASK17_ARATH1.420e-3250.74SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185545 ID=CN185545; Name=CN185545; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTAGACAAGAAATGAAGATATAATGCAATAGACAA
GGGTTCAATGACATTTATATCGAGCAGCATTCACAGGTTCACGACAAAAG
GAAATGTTGATGTTCAATACTAGACACCTACTGGCAACATACTAAAAGAC
CACTATCATTATAACCACATTCCTATCACAAATATTAATGACCGAGCCTT
CATCACTTCAGTCCTTCACTCGAATGCCCATTGGTTCTCTCTCCGAACCT
CCTCTTCTTCATCGGGAGAGAAGTCATTCTTGATGTTGAAGGTCTTGCGG
ATCTCCTCTGGAGTCTTCCCCTTGATCATGTCTGCAACAGTTTGGCAGGT
CAAGTCCAGCAAACCCTTAATGTTCAGGTAATTGGCTGCCAAGATTAGGT
CAAAGAGGGTATTCTGATCAACCTTGACGAAGTCTGCATCCCAGGTCTTG
AGATCATCCTCGGTCGACTTGTCGTCCTTCTTGTCCCCTGACCCAGCCTC
AACGTGCTTCTTGCAGTACTCGATAACCTTCGAGAGAATCGTGCTCGTCA
CATTCGGCAGCGGGATTACGGTGTCGGCGCAGTCGTCCTCCACCATGTGC
TTGATTGTCTGCGACTCGAGGGCCACCGTCT
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