CN185545

Overview
NameCN185545
Unique NameCN185545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = -3
Query:  348 IKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFV-KVDQNTLFDLILAANYLNIKGLLDLT 605
            IK M EDDCAD  IPLPNVTS IL  VIEYCKKHV          +S E+DLK WDA+F+ K++Q+ LFD+++AANYLNI+ LLDLT
Sbjct:    3 IKGMAEDDCADNGIPLPNVTSKILLLVIEYCKKHVV---------ESKEEDLKKWDAEFMKKMEQSILFDVMMAANYLNIQSLLDLT 80          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK7_ARATH (SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.800e-19
Identity = 52/101 (51.49%), Postives = 68/101 (67.33%), Query Frame = -3
Query:  324 ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK-HVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 623
            A + QTI HM+E +C D VIP+ NVTS IL  VIEYC K HV+A       +  +++DLK WD +F++ DQ T+F L+ AA  L+IK LL L  QTVADM+
Sbjct:   23 ARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNKHHVDAA------NPCSDEDLKKWDKEFMEKDQYTIFHLMNAAYDLHIKSLLALAYQTVADMV 117          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK21_ARATH (SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 39/107 (36.45%), Postives = 64/107 (59.81%), Query Frame = -3
Query:  249 IPLPN-VTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEE 566
            I LP  V   +LS + +YC+ H   G  +K        + K +D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GKTPEEIR+ F++ +D + +E+ E
Sbjct:   58 ISLPQRVNPAMLSLIFDYCRFHQVPGRSNK--------ERKVYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLE 156          
BLAST of CN185545 vs. ExPASy Swiss-Prot
Match: ASK20_ARATH (SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 38/107 (35.51%), Postives = 64/107 (59.81%), Query Frame = -3
Query:  249 IPLPN-VTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEE 566
            I LP  V   + S +++YC+ H   G  +K        + KT+D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GK PEEIR+ F++ +D + +E+ E
Sbjct:   58 ISLPQRVNPAMFSLILDYCRFHQLPGRSNK--------ERKTYDERFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKNPEEIREIFHLPDDLTEEEKLE 156          
The following BLAST results are available for this feature:
BLAST of CN185545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ASK6_ARATH2.512e-2162.07SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]
ASK7_ARATH1.800e-1951.49SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK... [more]
ASK21_ARATH8.099e-1236.45SKP1-like protein 21 OS=Arabidopsis thaliana GN=AS... [more]
ASK20_ARATH2.356e-1135.51SKP1-like protein 20 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185545 ID=CN185545; Name=CN185545; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTAGACAAGAAATGAAGATATAATGCAATAGACAA
GGGTTCAATGACATTTATATCGAGCAGCATTCACAGGTTCACGACAAAAG
GAAATGTTGATGTTCAATACTAGACACCTACTGGCAACATACTAAAAGAC
CACTATCATTATAACCACATTCCTATCACAAATATTAATGACCGAGCCTT
CATCACTTCAGTCCTTCACTCGAATGCCCATTGGTTCTCTCTCCGAACCT
CCTCTTCTTCATCGGGAGAGAAGTCATTCTTGATGTTGAAGGTCTTGCGG
ATCTCCTCTGGAGTCTTCCCCTTGATCATGTCTGCAACAGTTTGGCAGGT
CAAGTCCAGCAAACCCTTAATGTTCAGGTAATTGGCTGCCAAGATTAGGT
CAAAGAGGGTATTCTGATCAACCTTGACGAAGTCTGCATCCCAGGTCTTG
AGATCATCCTCGGTCGACTTGTCGTCCTTCTTGTCCCCTGACCCAGCCTC
AACGTGCTTCTTGCAGTACTCGATAACCTTCGAGAGAATCGTGCTCGTCA
CATTCGGCAGCGGGATTACGGTGTCGGCGCAGTCGTCCTCCACCATGTGC
TTGATTGTCTGCGACTCGAGGGCCACCGTCT
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