CN185542

Overview
NameCN185542
Unique NameCN185542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9518 contig Csv1_Contig9518:308..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: YKVO_BACSU (Uncharacterized oxidoreductase ykvO OS=Bacillus subtilis GN=ykvO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 51/168 (30.36%), Postives = 72/168 (42.86%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLND--EAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            GKL+IL  N G        E T E        N +      Q A  L       SI++  S  G +    A S+YGA+K A+  L R    +     IR N V+P  + TP  +    D  E  L+      P  + G P E+++ V+FL    +SY+TG  +  DGG
Sbjct:   79 GKLDILFANAGIGNFLPLGEITEEQVDRTFDINVKGTIFTVQKALSLFPDK-VGSIIVTGSTAGSIGN-PAFSVYGASKAALRALVRNWILDLKGTEIRVNVVSPGGILTPAYDELFGDALEEVLENSRNTVPAGKVGTPEEVANAVSFLASDESSYLTGVELFVDGG 244          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_BUCBP (3-oxoacyl-[acyl-carrier-protein] reductase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=fabG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 47/180 (26.11%), Postives = 82/180 (45.56%), Query Frame = -2
Query:  214 NQVSSLLD------GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 735
            N+++  +D      G+++ILINN G    K  +    +D++ ++  N  S + + +     +  +    I+ + SV   +      + Y A K  +    + LA E A   I  N + P  + T +T +    +  L +   + PM+R G   EIS +  FL    A+YITGQ I  +GG
Sbjct:   65 NEITKTMDFVYKNFGRVDILINNAGIIRDKLLINMKTQDWNSVLNVNLNSIFYMSKSVIRNMIKNKQGKIITIGSVIAHIGNCGQTN-YSAAKLGLVGFHKSLALELAPKGITVNMIAPGLIKTGMTNNLSQKQ--LSKYLSKIPMKRLGTIKEISKITLFLISNDANYITGQVIHVNGG 241          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: 3BHD_COMTE (3-beta-hydroxysteroid dehydrogenase OS=Comamonas testosteroni PE=1 SV=5)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 53/169 (31.36%), Postives = 81/169 (47.93%), Query Frame = -2
Query:  220 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLAR--ILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGK---PNEISSLVAFLCMPAASYITGQTISAD 711
            G LN+L+NN G  +         EDFS L+  N ES +  CQ     +K +G  SI+ M+SV   + +      Y A+K A++ L R   L+C      IR NS+ P  + TP+ ++ L      + V     + R G+   P  I+ LV FL    +S ++G  + AD
Sbjct:   80 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPIEQYAG-YSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLFLASDESSVMSGSELHAD 246          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_MYCAV (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium avium GN=fabG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 44/166 (26.51%), Postives = 76/166 (45.78%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G + +L++N G +     +  T E F+ ++  N   A+ + Q A   ++      I+ + SV G   + +  + Y A K  +  +AR ++ E ++  +  N V P ++ T +T +   DE          P +R G   E+   V+FL    ASYI G  I  DGG
Sbjct:   88 GPVEVLVSNAGISKDAFLIRMTEERFTEVINANLTGAFRVTQRAARSMQKKRFGRIIYIGSVSGMWGIGNQAN-YAAAKAGLIGMARSISRELSKAGVTANVVAPGYIDTEMTRAL--DERIQAGALEFIPAKRVGTAAEVPGAVSFLASEDASYIAGAVIPVDGG 250          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: DCXR_CAVPO (L-xylulose reductase OS=Cavia porcellus GN=DCXR PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 42/169 (24.85%), Postives = 74/169 (43.79%), Query Frame = -2
Query:  205 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPA 711
            G  ++L+NN    + +  +E T E        N  +   + Q+    + A G    ++  S       +   ++Y +TKGA+  L +++A E     IR N+V P  V TP+  +  +D    K +  R P+ +  +   +   + FL    +   TG T+  DGGF A
Sbjct:   75 GPADLLVNNAAVALLQPFLEVTKEACVTSFNVNLRAVIQVSQIVAKGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALYMLTKMMALELGPHKIRVNAVNPTVVMTPMGRTNWSDPHKAKAMLDRIPLGKFAEVENVVDTILFLLSNRSGMTTGSTLPVDGGFLA 243          
The following BLAST results are available for this feature:
BLAST of CN185542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
YKVO_BACSU7.138e-1130.36Uncharacterized oxidoreductase ykvO OS=Bacillus su... [more]
FABG_BUCBP7.138e-1126.113-oxoacyl-[acyl-carrier-protein] reductase OS=Buch... [more]
3BHD_COMTE7.138e-1131.363-beta-hydroxysteroid dehydrogenase OS=Comamonas t... [more]
FABG_MYCAV9.322e-1126.513-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
DCXR_CAVPO9.322e-1124.85L-xylulose reductase OS=Cavia porcellus GN=DCXR PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185542 ID=CN185542; Name=CN185542; organism=Citrus sinensis; type=EST; length=742bp
TTTTTTTTTTTTTTTTTATGGAATAAAGCGACGACACTCGATAAAAGCCT
TATAAAAGACCATCCACAAGATGAGTCAAAAATCAAAACACTTACATGCT
GGCGGTTTATTAGGGCCGGAGAAATCACAACACTAAGTTATCAGATTCGA
AGATTTCAGAGAAGTGGACAAAATAAATCAGGTACTTGGGAAGAAGAATG
CATGCGCGGGAAATCCTCCGTCAGCGGAAATTGTCTGACCAGTTATATAA
GAGGCTGCAGGCATGCATAAAAATGCTACCAATGAAGATATCTCATTTGG
CTTCCCTGTGCGTCTCATTGGAGTTCGACCCTCGACTTCCTTTAAAAATG
CCTCATCATTCAGAAAAGATTCAGTTAAAGGAGTCGGGACGAACCAAGGT
GTGACAGAATTGGTCCTAATATTGTCTTGAGCCCACTCGCATGCCAAAAT
CCTCGCAAGATGGTTCATGGCTCCTTTCGTAGCTCCATATATGGATCCAG
CGTCAACAACTGACACCCCCCCACAAACAGAAGACATTAGAACAATACTT
GCTGCCCCCGAAGCTTTCAAAAGAGGATGTGCAAGTTGGCACAGATTGTA
AGCAGACTCAAAATTGGTAGCCATGAGAAACGAGAAATCTTCTGCTGTGT
ACTCCACAGTCGCCTTTCTTATAGTCGTCCCGACGTTGTTTATGAGAATG
TTAAGTTTTCCATCCAACAGAGAGGAGACTTGGTTTATAAGC
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