CN185542

Overview
NameCN185542
Unique NameCN185542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9518 contig Csv1_Contig9518:308..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: ARDH_PICST (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Pichia stipitis GN=ARDH PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.616e-18
Identity = 57/172 (33.14%), Postives = 94/172 (54.65%), Query Frame = -2
Query:  211 GKL-NILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQ-LAHPLLKASGAASIVLMSSVCGG-VSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEV-EGRTPMRRTGKPNE-ISSLVAFLCMPAASYITGQTISADGGF 711
            GK+ ++LIN  G         Y A +   +M  N   ++ + Q  A PL++ +   SI+L+ S+ G  V+      +Y  +K  + HL R LACEWA+ NIR N+++P ++ TPLT + ++    +KE  E + PM+R  +P E + S++      A+SY TG  +  DGG+
Sbjct:  104 GKIADLLINTAGYCENFPAETYPATNAESIMKVNGLGSFYVSQSFARPLIQNNLRGSIILIGSMSGTIVNDPQPQCMYNMSKAGVIHLVRSLACEWAKYNIRVNTLSPGYILTPLTRNVISGHTEMKEAWESKIPMKRMAEPKEFVGSILYLASETASSYTTGHNLVVDGGY 275          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: HDHA_ECOLI (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli (strain K12) GN=hdhA PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.873e-18
Identity = 54/166 (32.53%), Postives = 91/166 (54.82%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            GK++IL+NN G    K   +    DF      N  S ++L QL  P ++ +G   I+ ++S+      ++  S Y ++K A +HL R +A +  + NIR N + P  + T   +S +  E   K ++  TP+RR G+P +I++   FLC PAAS+++GQ ++  GG
Sbjct:   87 GKVDILVNNAGGGGPKP-FDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTS-YASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQ-HTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: HDHA_ECO57 (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli O157:H7 GN=hdhA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.873e-18
Identity = 54/166 (32.53%), Postives = 91/166 (54.82%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            GK++IL+NN G    K   +    DF      N  S ++L QL  P ++ +G   I+ ++S+      ++  S Y ++K A +HL R +A +  + NIR N + P  + T   +S +  E   K ++  TP+RR G+P +I++   FLC PAAS+++GQ ++  GG
Sbjct:   87 GKVDILVNNAGGGGPKP-FDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTS-YASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQ-HTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: YXBG_BACSU (Uncharacterized oxidoreductase yxbG OS=Bacillus subtilis GN=yxbG PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17
Identity = 55/179 (30.73%), Postives = 95/179 (53.07%), Query Frame = -2
Query:  196 GKLNILINNVGTTIRKATV-EYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLND------EAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAHAF 711
            G ++IL NN G       V EY  + F  ++A +    +   +   PL+  +G  SI+  SS+ G  + +D    Y A KG + +L + +A ++A++ IR NS++P  + TPL +           E F +  +  TP+ R G+P E++++  FL    +SY+TG+ I+ADGG  A+ +
Sbjct:   82 GTIDILFNNAGVDQEGGKVHEYPVDLFDRIIAVDLRGTFLCSKYLIPLMLENGG-SIINTSSMSGRAADLDRSG-YNAAKGGITNLTKAMAIDYARNGIRVNSISPGTIETPLIDKLAGTKEQEMGEQFREANKWITPLGRLGQPKEMATVALFLASDDSSYVTGEDITADGGIMAYTW 258          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: PECR_PONAB (Peroxisomal trans-2-enoyl-CoA reductase OS=Pongo abelii GN=PECR PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17
Identity = 55/179 (30.73%), Postives = 92/179 (51.40%), Query Frame = -2
Query:  214 NQVSSLLD--GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPL-LKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFV--PTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 735
            N V S LD  GK+N L+NN G          +++ +  ++ TN    + +C+  +   +K  G + + ++ S+  G+ +       GA +  + +L + LA EWA   +R N V P  +   T +       ++F +E   + P +R G P E+SS+V FL  PAAS+ITGQ++  DGG
Sbjct:   89 NLVKSTLDIFGKINFLVNNGGGQFLSLAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVSIKTGLPLAVHS---GAARAGVYNLTKSLALEWACSGVRINCVAPGVIYSQTAVENYGSYGQSFFEESFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGG 264          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: GNO_GLUOX (Gluconate 5-dehydrogenase OS=Gluconobacter oxydans GN=gno PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.908e-17
Identity = 53/168 (31.55%), Postives = 86/168 (51.19%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSI--YGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G ++ILINN G   R    E++ +D+  LM+TN  + + + Q     +   G   IV   ++C   S +    I  Y ATKGA+ +L + +A +W +  ++ N + P +  T +TE  + DE F   +  RTP  R G+  E+     FL   A+S++ GQ +  DGG
Sbjct:   87 GPIDILINNAGIQRRAPLEEFSRKDWDDLMSTNVNAVFFVGQAVARHMIPRGRGKIV---NICSVQSELARPGIAPYTATKGAVKNLTKGMATDWGRHGLQINGLAPGYFATEMTERLVADEEFTDWLCKRTPAGRWGQVEELVGAAVFLSSRASSFVNGQVLMVDGG 251          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_CHLMU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia muridarum GN=fabG PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.908e-17
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQ-LAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G +++++NN G T     +  + E++S ++ TN  S YN+C  +  P++KA   A + + S V  G+      + Y A K  +   ++ L+ E    NIR N + P F+ T +T+  L+D    + ++G  P+ R G P EI+    FL    +SYITGQ +S DGG
Sbjct:   84 GTIDVVVNNAGITRDSLLMRMSEEEWSSVIDTNLGSIYNVCSAVIRPMIKARSGAIVNISSIV--GLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDMTKG-LSDNLKNEWLKG-VPLGRVGTPEEIAMAALFLASNQSSYITGQVLSVDGG 246          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: Y4LA_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4lA OS=Rhizobium sp. (strain NGR234) GN=NGR_a02730 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17
Identity = 59/174 (33.91%), Postives = 89/174 (51.15%), Query Frame = -2
Query:  202 GKLNILINNVG----TTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAH 711
            G +++L+NN      T   +A ++     +   MATN       C+ A P + A G  +IV MSS C G+S   A + Y  +K AMN L+  LA ++    IR N+V P  + T    + L D+   + +     + R G P ++++LVAFL    AS+ITGQ +  DGG  AH
Sbjct:   82 GGVDLLVNNASAMHLTPRDRAILDLDLAVWDQTMATNLRGTLLCCRQAIPRMIARGGGAIVNMSS-CQGLSGDTAQTSYAVSKAAMNMLSASLATQYGHAQIRCNAVAPGLIMTERLLAKL-DKCMQRHLSRHQLLPRVGHPEDVAALVAFLLSDDASFITGQVVCIDGGMLAH 253          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: Y2146_BRAJA (Probable short-chain type dehydrogenase/reductase blr2146 OS=Bradyrhizobium japonicum GN=blr2146 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17
Identity = 60/174 (34.48%), Postives = 89/174 (51.15%), Query Frame = -2
Query:  202 GKLNILINNVG----TTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAH 711
            G +++L+NN      T   +A +E     +   MATN       C+ A P + A G  +IV MSS C G+S   A + Y A+K AMN L+  LA ++    IR N+V P  + T    + L D      +     + R G+P ++++LVAFL    A++ITGQ +  DGG  AH
Sbjct:   82 GGVDLLVNNASAMHLTPRDRAILELELAVWDQTMATNLRGTLLCCRQAIPRMIARGGGAIVNMSS-CQGLSGDTALTSYAASKAAMNMLSSSLATQYGHAQIRCNAVAPGLIMTERLLAKL-DACMQTHLRRHQLLPRVGRPEDVAALVAFLLSDDAAFITGQVVCIDGGMLAH 253          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_STAAW (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MW2) GN=fabG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 54/166 (32.53%), Postives = 90/166 (54.22%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G L++L+NN G T     +    +++  ++ TN +  +N  Q A P +    + +I+ +SSV G V      + Y ATK  +  L +  A E A   I  N+V P F+ + +T++ L+DE   +++  + P+ R G+  +I++ VAFL    A YITGQTI  +GG
Sbjct:   81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQAN-YVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA-LSDE-LKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243          
The following BLAST results are available for this feature:
BLAST of CN185542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ARDH_PICST4.616e-1833.14D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
HDHA_ECOLI7.873e-1832.537-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
HDHA_ECO577.873e-1832.537-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
YXBG_BACSU1.028e-1730.73Uncharacterized oxidoreductase yxbG OS=Bacillus su... [more]
PECR_PONAB2.291e-1730.73Peroxisomal trans-2-enoyl-CoA reductase OS=Pongo a... [more]
GNO_GLUOX3.908e-1731.55Gluconate 5-dehydrogenase OS=Gluconobacter oxydans... [more]
FABG_CHLMU3.908e-1732.343-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
Y4LA_RHISN5.103e-1733.91Uncharacterized short-chain type dehydrogenase/red... [more]
Y2146_BRAJA5.103e-1734.48Probable short-chain type dehydrogenase/reductase ... [more]
FABG_STAAW1.939e-1632.533-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185542 ID=CN185542; Name=CN185542; organism=Citrus sinensis; type=EST; length=742bp
TTTTTTTTTTTTTTTTTATGGAATAAAGCGACGACACTCGATAAAAGCCT
TATAAAAGACCATCCACAAGATGAGTCAAAAATCAAAACACTTACATGCT
GGCGGTTTATTAGGGCCGGAGAAATCACAACACTAAGTTATCAGATTCGA
AGATTTCAGAGAAGTGGACAAAATAAATCAGGTACTTGGGAAGAAGAATG
CATGCGCGGGAAATCCTCCGTCAGCGGAAATTGTCTGACCAGTTATATAA
GAGGCTGCAGGCATGCATAAAAATGCTACCAATGAAGATATCTCATTTGG
CTTCCCTGTGCGTCTCATTGGAGTTCGACCCTCGACTTCCTTTAAAAATG
CCTCATCATTCAGAAAAGATTCAGTTAAAGGAGTCGGGACGAACCAAGGT
GTGACAGAATTGGTCCTAATATTGTCTTGAGCCCACTCGCATGCCAAAAT
CCTCGCAAGATGGTTCATGGCTCCTTTCGTAGCTCCATATATGGATCCAG
CGTCAACAACTGACACCCCCCCACAAACAGAAGACATTAGAACAATACTT
GCTGCCCCCGAAGCTTTCAAAAGAGGATGTGCAAGTTGGCACAGATTGTA
AGCAGACTCAAAATTGGTAGCCATGAGAAACGAGAAATCTTCTGCTGTGT
ACTCCACAGTCGCCTTTCTTATAGTCGTCCCGACGTTGTTTATGAGAATG
TTAAGTTTTCCATCCAACAGAGAGGAGACTTGGTTTATAAGC
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