CN185542

Overview
NameCN185542
Unique NameCN185542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_STAAS (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MSSA476) GN=fabG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 54/166 (32.53%), Postives = 90/166 (54.22%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G L++L+NN G T     +    +++  ++ TN +  +N  Q A P +    + +I+ +SSV G V      + Y ATK  +  L +  A E A   I  N+V P F+ + +T++ L+DE   +++  + P+ R G+  +I++ VAFL    A YITGQTI  +GG
Sbjct:   81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQAN-YVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA-LSDE-LKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_STAAR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MRSA252) GN=fabG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 54/166 (32.53%), Postives = 90/166 (54.22%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G L++L+NN G T     +    +++  ++ TN +  +N  Q A P +    + +I+ +SSV G V      + Y ATK  +  L +  A E A   I  N+V P F+ + +T++ L+DE   +++  + P+ R G+  +I++ VAFL    A YITGQTI  +GG
Sbjct:   81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQAN-YVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA-LSDE-LKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_STAAN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain N315) GN=fabG PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 54/166 (32.53%), Postives = 90/166 (54.22%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G L++L+NN G T     +    +++  ++ TN +  +N  Q A P +    + +I+ +SSV G V      + Y ATK  +  L +  A E A   I  N+V P F+ + +T++ L+DE   +++  + P+ R G+  +I++ VAFL    A YITGQTI  +GG
Sbjct:   81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQAN-YVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA-LSDE-LKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_STAAM (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fabG PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 54/166 (32.53%), Postives = 90/166 (54.22%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G L++L+NN G T     +    +++  ++ TN +  +N  Q A P +    + +I+ +SSV G V      + Y ATK  +  L +  A E A   I  N+V P F+ + +T++ L+DE   +++  + P+ R G+  +I++ VAFL    A YITGQTI  +GG
Sbjct:   81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQAN-YVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA-LSDE-LKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_STAAC (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain COL) GN=fabG PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 54/166 (32.53%), Postives = 90/166 (54.22%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G L++L+NN G T     +    +++  ++ TN +  +N  Q A P +    + +I+ +SSV G V      + Y ATK  +  L +  A E A   I  N+V P F+ + +T++ L+DE   +++  + P+ R G+  +I++ VAFL    A YITGQTI  +GG
Sbjct:   81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQAN-YVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA-LSDE-LKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: BACC_BACAM (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus amyloliquefaciens GN=bacC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 62/185 (33.51%), Postives = 95/185 (51.35%), Query Frame = -2
Query:  205 NQVSSLLD--GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTE-SFL-NDEAFLKEVEGR----TPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPA 735
            N + S +D  G L++LINN G  I     E    D++ ++  N    + + + A   +  SG  +I+   SV G V+  D  +   +  G +   A       A+ NIR N V P  + TPL E SFL N+E  L+E++       P+ R GKP EI++++ FL    +SY+TG  I+ADGG+ A
Sbjct:   69 NAILSAVDKFGGLDVLINNAGIEIVAPIHEMELSDWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQTDAFYRPSIIAKHNIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVMLFLASDLSSYMTGSAITADGGYTA 253          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: YOHF_ECOLI (Uncharacterized oxidoreductase yohF OS=Escherichia coli (strain K12) GN=yohF PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 50/168 (29.76%), Postives = 89/168 (52.98%), Query Frame = -2
Query:  211 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLA-HPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGF 711
            G++++L+NN G   +   ++   +++  +   + + A+   Q+A   ++K      I+ ++SV     + DA S Y A K A+  L + +A E  +  I  N+V P  + TP+    ++D     + E   P+RR G  +EI+SLV +LC   A+Y TGQ++  DGGF
Sbjct:   79 GRIDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDA-SAYTAAKHALGGLTKAMALELVRHKILVNAVAPGAIATPMNG--MDDSDVKPDAEPSIPLRRFGATHEIASLVVWLCSEGANYTTGQSLIVDGGF 243          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: Y4VI_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4vI OS=Rhizobium sp. (strain NGR234) GN=NGR_a01150 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 55/168 (32.74%), Postives = 84/168 (50.00%), Query Frame = -2
Query:  211 KLNILINNVGT-TIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLN-DEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGF 708
            ++ +L+NN G      AT +   EDF   +A N   AY++      L+K    A+IV ++S+ G +      S Y A+K  +  + + LAC WA   IR  +V P  V TP+        +  +  +  R P+ R  +P+EI+  V FL    ASYITG T+  DGG+
Sbjct:   83 RIEVLVNNAGIGPTMAATADTALEDFQRALAINLVGAYSVACETAKLMKPG--AAIVNVASLAGLLGNPKR-SAYAASKAGLISITKSLACRWASRGIRVTAVAPGHVRTPMVAELERAGKLDVSAIRRRVPLGRIARPDEIARAVRFLASAQASYITGSTLVVDGGW 247          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 58/176 (32.95%), Postives = 85/176 (48.30%), Query Frame = -2
Query:  205 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFL-------NDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPA 711
            G+L+IL+NN G        E + EDF   MA N +  + L + A   +K  G   IV +SS  G + +     +Y  +K A+  L R LA ++    IR N+V P    T  +E  +       N E  LK++  R PM+R GK  EI+  + F     A ++TG  I+ DGG  A
Sbjct:   79 GRLDILVNNAGIVPYGNIEETSEEDFDKTMAVNVKGPFLLSKYAVEQMKKQGGGVIVNVSSEAGLIGI-PRRCVYSVSKAALLGLTRSLAVDYVDYGIRVNAVCPG---TTQSEGLMARVKASPNPEELLKKMTSRIPMKRLGKEEEIAFAILFAACDEAGFMTGSIINIDGGSTA 250          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: NODG_AZOBR (Nodulation protein G OS=Azospirillum brasilense GN=nodG PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 49/166 (29.52%), Postives = 82/166 (49.40%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G ++IL+NN G T  K   +     +  ++ATN  S +N+ Q   P +   G   I+ +SSV  GV      + Y A K  +    + LA E A   +  N++ P ++ T +  +   D    + +    PM+R G+P+EI   V++L    A Y+TG T++ +GG
Sbjct:   80 GPVDILVNNAGITRDKFFAKMDKAQWDAVIATNLSSLFNVTQQVSPKMAERGWGRIINISSV-NGVKGQAGQTNYSAAKAGVIGFTKALAAELATKGVTVNAIAPGYIGTDMVMAIRED--IRQAITDSVPMKRLGRPDEIGGAVSYLASEIAGYVTGSTLNINGG 242          
The following BLAST results are available for this feature:
BLAST of CN185542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
FABG_STAAS1.939e-1632.533-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAR1.939e-1632.533-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAN1.939e-1632.533-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAM1.939e-1632.533-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAC1.939e-1632.533-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
BACC_BACAM2.533e-1633.51Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
YOHF_ECOLI3.308e-1629.76Uncharacterized oxidoreductase yohF OS=Escherichia... [more]
Y4VI_RHISN3.308e-1632.74Uncharacterized short-chain type dehydrogenase/red... [more]
Y325_THEMA3.308e-1632.95Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
NODG_AZOBR3.308e-1629.52Nodulation protein G OS=Azospirillum brasilense GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185542 ID=CN185542; Name=CN185542; organism=Citrus sinensis; type=EST; length=742bp
TTTTTTTTTTTTTTTTTATGGAATAAAGCGACGACACTCGATAAAAGCCT
TATAAAAGACCATCCACAAGATGAGTCAAAAATCAAAACACTTACATGCT
GGCGGTTTATTAGGGCCGGAGAAATCACAACACTAAGTTATCAGATTCGA
AGATTTCAGAGAAGTGGACAAAATAAATCAGGTACTTGGGAAGAAGAATG
CATGCGCGGGAAATCCTCCGTCAGCGGAAATTGTCTGACCAGTTATATAA
GAGGCTGCAGGCATGCATAAAAATGCTACCAATGAAGATATCTCATTTGG
CTTCCCTGTGCGTCTCATTGGAGTTCGACCCTCGACTTCCTTTAAAAATG
CCTCATCATTCAGAAAAGATTCAGTTAAAGGAGTCGGGACGAACCAAGGT
GTGACAGAATTGGTCCTAATATTGTCTTGAGCCCACTCGCATGCCAAAAT
CCTCGCAAGATGGTTCATGGCTCCTTTCGTAGCTCCATATATGGATCCAG
CGTCAACAACTGACACCCCCCCACAAACAGAAGACATTAGAACAATACTT
GCTGCCCCCGAAGCTTTCAAAAGAGGATGTGCAAGTTGGCACAGATTGTA
AGCAGACTCAAAATTGGTAGCCATGAGAAACGAGAAATCTTCTGCTGTGT
ACTCCACAGTCGCCTTTCTTATAGTCGTCCCGACGTTGTTTATGAGAATG
TTAAGTTTTCCATCCAACAGAGAGGAGACTTGGTTTATAAGC
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