CN185542

Overview
NameCN185542
Unique NameCN185542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9518 contig Csv1_Contig9518:308..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: PECR_CAVPO (Peroxisomal trans-2-enoyl-CoA reductase OS=Cavia porcellus GN=PECR PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 53/171 (30.99%), Postives = 87/171 (50.88%), Query Frame = -2
Query:  214 LDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAH-PLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLND--EAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 717
            L GK++ L+NN G     +    +++ +  ++ TN    + +C+ A+   +K  G A + ++  + G   V  +G    A +G + +L + LA  WA+  IR N V P  V +        D  +    +   + P +R G P E+SSLV FL  PAAS+ITGQ ++ DGG
Sbjct:   97 LYGKIDFLVNNGGGQFWSSPEHISSKGWHAVIETNLTGTFYMCKAAYNSWMKEHGGAIVNIIILLNGQPFVAHSG----AARGGVYNLTKSLALGWARSGIRINCVAPGTVYSQTAMDNYGDMGKTLFADAFQKIPAKRLGVPEEVSSLVCFLLSPAASFITGQLVNVDGG 263          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_VIBCH (3-oxoacyl-[acyl-carrier-protein] reductase OS=Vibrio cholerae GN=fabG PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 56/167 (33.53%), Postives = 86/167 (51.50%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSI-YGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G ++IL+NN G T     +    E++S +M TN  S + L +     +       I+ + SV G +   +AG   Y A K  +    + +A E A   +  N+V P F+ T +T++ LNDE     +  + P  R G P EI+S VAFL  P A+YITG+T+  +GG
Sbjct:   78 GGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMG--NAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKA-LNDEQRTATL-AQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGG 240          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: DHG2_BACME (Glucose 1-dehydrogenase 2 OS=Bacillus megaterium GN=gdhII PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 56/184 (30.43%), Postives = 88/184 (47.83%), Query Frame = -2
Query:  193 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSI-----------YGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAHAFF 711
            G L+++INN G      + E + E+++ ++ TN   A+         L +  A    + + + G  +V++  S+           Y A+KG M  +   LA E+A   IR N++ P  + TP+      D     +VE   PM   GKP EI+S+ AFL    ASY+TG T+ ADGG   +  F
Sbjct:   84 GSLDVMINNAGVENPVPSHELSLENWNQVIDTNLTGAF---------LGSREAIKYFVENDIKG--NVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAIDTPINAEKFADPEQRADVESMIPMGYIGKPEEIASVAAFLASSQASYVTGITLFADGGMTKYPSF 256          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: PECR_HUMAN (Peroxisomal trans-2-enoyl-CoA reductase OS=Homo sapiens GN=PECR PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 56/180 (31.11%), Postives = 88/180 (48.89%), Query Frame = -2
Query:  214 NQVSSLLD--GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIV--LMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFV--PTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 735
            N V S LD  GK+N L+NN G          +++ +  ++ TN    + +C+  +         SIV  ++ +  G    V +G    A +  + +L + LA EWA   IR N V P  +   T +       ++F +    + P +R G P E+SS+V FL  PAAS+ITGQ++  DGG
Sbjct:   89 NLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGFPLAVHSG----AARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGG 264          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: Y182_METEA (Uncharacterized oxidoreductase MexAM1_META1p0182 OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=MexAM1_META1p0182 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 56/167 (33.53%), Postives = 89/167 (53.29%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESF-LNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G+L++L+NN G     A  E T E +  +   N        Q A   L   G  SI+ +SSV   V ++   ++Y  TKGA+N ++ +LA E A   IR N V+P +V T  T +  +        +  +TP+ R+G+P++I+ +VAFL    A ++TG+ I+A GG
Sbjct:   83 GRLDVLVNNSGVYEFAAIEEVTEEHYRRIFDVNVLGVLLATQAASKHLGEGG--SIINISSVVTDV-LMPTSAVYSGTKGALNAISGVLANELAPRKIRVNVVSPGYVVTEGTHTAGIAGSEMEAGLVAQTPLGRSGQPDDIAGVVAFLASDDARWVTGEVINASGG 246          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: IDNO_ECOLI (Gluconate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=idnO PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 47/168 (27.98%), Postives = 85/168 (50.60%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSI--YGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G +++L+NN G   R    E+  ++++ ++A N  + + + Q     +    A  ++   ++C   S +   +I  Y A+KGA+  L R +  E A+ NI+ N + P +  T +T++ + DEAF   +  RTP  R G P E+     FL   A+ ++ G  +  DGG
Sbjct:   85 GPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVI---NICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGG 249          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: IDNO_ECOL6 (Gluconate 5-dehydrogenase OS=Escherichia coli O6 GN=idnO PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 47/168 (27.98%), Postives = 85/168 (50.60%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSI--YGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G +++L+NN G   R    E+  ++++ ++A N  + + + Q     +    A  ++   ++C   S +   +I  Y A+KGA+  L R +  E A+ NI+ N + P +  T +T++ + DEAF   +  RTP  R G P E+     FL   A+ ++ G  +  DGG
Sbjct:   85 GPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVI---NICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGG 249          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g24360 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 52/167 (31.14%), Postives = 82/167 (49.10%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCM-PAASYITGQTISADGG 711
            G +++++NN G T     +      +  ++A N    +   Q A  ++       I+ +SSV G +  +   + Y A KG +   ++  A E A  NI  N V P F+ + +T     D    K++ G  P+ R GK  E++ LV FL + PAASYITGQ  + DGG
Sbjct:  153 GTIDVVVNNAGITRDTLLIRMKQSQWDEVIALNLTGVFLCTQAAVKIMMKKKRGRIINISSVVGLIGNIGQAN-YAAAKGGVISFSKTAAREGASRNINVNVVCPGFIASDMTAELGEDME--KKILGTIPLGRYGKAEEVAGLVEFLALSPAASYITGQAFTIDGG 316          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: DHG_BACME (Glucose 1-dehydrogenase OS=Bacillus megaterium PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 58/196 (29.59%), Postives = 95/196 (48.47%), Query Frame = -2
Query:  193 LINQVSSLLD--GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSI-----------YGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAHAFF 741
            +IN V S +   GKL+++INN G     ++ E +  D++ ++ TN   A+         L +  A    + + + G  +V++  S+           Y A+KG M  +   LA E+A   IR N++ P  + TP+      D     +VE   PM   G+P EI+++ A+L    ASY+TG T+ ADGG   +  F
Sbjct:   72 VINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAF---------LGSREAIKYFVENDIKG--TVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMTQYPSF 256          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 52/167 (31.14%), Postives = 88/167 (52.69%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVE-YTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G L++++NN G T R AT+   T E F  ++A + +  +N  +LA  +++     +IV MSSV G V +V   + Y A K  +  + +  A E A   IR N++ P  + + +TE+    +    +     PM R G+P+E++S+  FL    +SY+TG  +   GG
Sbjct:   82 GGLDVMVNNAGIT-RDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTN-YSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAM--PQRIWDQKLAEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGG 244          
The following BLAST results are available for this feature:
BLAST of CN185542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PECR_CAVPO7.369e-1630.99Peroxisomal trans-2-enoyl-CoA reductase OS=Cavia p... [more]
FABG_VIBCH7.369e-1633.533-oxoacyl-[acyl-carrier-protein] reductase OS=Vibr... [more]
DHG2_BACME9.625e-1630.43Glucose 1-dehydrogenase 2 OS=Bacillus megaterium G... [more]
PECR_HUMAN1.257e-1531.11Peroxisomal trans-2-enoyl-CoA reductase OS=Homo sa... [more]
Y182_METEA1.642e-1533.53Uncharacterized oxidoreductase MexAM1_META1p0182 O... [more]
IDNO_ECOLI1.642e-1527.98Gluconate 5-dehydrogenase OS=Escherichia coli (str... [more]
IDNO_ECOL61.642e-1527.98Gluconate 5-dehydrogenase OS=Escherichia coli O6 G... [more]
FABG_ARATH2.144e-1531.143-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
DHG_BACME2.144e-1529.59Glucose 1-dehydrogenase OS=Bacillus megaterium PE=... [more]
Y1385_MYCBO2.800e-1531.14Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185542 ID=CN185542; Name=CN185542; organism=Citrus sinensis; type=EST; length=742bp
TTTTTTTTTTTTTTTTTATGGAATAAAGCGACGACACTCGATAAAAGCCT
TATAAAAGACCATCCACAAGATGAGTCAAAAATCAAAACACTTACATGCT
GGCGGTTTATTAGGGCCGGAGAAATCACAACACTAAGTTATCAGATTCGA
AGATTTCAGAGAAGTGGACAAAATAAATCAGGTACTTGGGAAGAAGAATG
CATGCGCGGGAAATCCTCCGTCAGCGGAAATTGTCTGACCAGTTATATAA
GAGGCTGCAGGCATGCATAAAAATGCTACCAATGAAGATATCTCATTTGG
CTTCCCTGTGCGTCTCATTGGAGTTCGACCCTCGACTTCCTTTAAAAATG
CCTCATCATTCAGAAAAGATTCAGTTAAAGGAGTCGGGACGAACCAAGGT
GTGACAGAATTGGTCCTAATATTGTCTTGAGCCCACTCGCATGCCAAAAT
CCTCGCAAGATGGTTCATGGCTCCTTTCGTAGCTCCATATATGGATCCAG
CGTCAACAACTGACACCCCCCCACAAACAGAAGACATTAGAACAATACTT
GCTGCCCCCGAAGCTTTCAAAAGAGGATGTGCAAGTTGGCACAGATTGTA
AGCAGACTCAAAATTGGTAGCCATGAGAAACGAGAAATCTTCTGCTGTGT
ACTCCACAGTCGCCTTTCTTATAGTCGTCCCGACGTTGTTTATGAGAATG
TTAAGTTTTCCATCCAACAGAGAGGAGACTTGGTTTATAAGC
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