CN185542

Overview
NameCN185542
Unique NameCN185542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9518 contig Csv1_Contig9518:308..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350/MT1393 OS=Mycobacterium tuberculosis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 52/167 (31.14%), Postives = 88/167 (52.69%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVE-YTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G L++++NN G T R AT+   T E F  ++A + +  +N  +LA  +++     +IV MSSV G V +V   + Y A K  +  + +  A E A   IR N++ P  + + +TE+    +    +     PM R G+P+E++S+  FL    +SY+TG  +   GG
Sbjct:   82 GGLDVMVNNAGIT-RDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTN-YSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAM--PQRIWDQKLAEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGG 244          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: PHAB_ACISR (Acetoacetyl-CoA reductase OS=Acinetobacter sp. (strain RA3849) GN=phaB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 49/171 (28.65%), Postives = 89/171 (52.05%), Query Frame = -2
Query:  202 DGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAH 714
            +G++++L+NN G T      + + E +S ++ TN ++ + + Q     +    +  IV +SSV  G+      + Y A+K  +    + LA E A+ NI  N V P +  TP+  +   D   +K +E + P++R   P EI++ V +L     +Y+TG+T+S +GG   H
Sbjct:   81 EGRVDVLVNNAGITRDATFKKMSYEQWSQVIDTNLKTLFTVTQPVFNKMLEQKSGRIVNISSV-NGLKGQFGQANYSASKAGIIGFTKALAQEGARSNICVNVVAPGYTATPMVTAMRED--VIKSIEAQIPLQRLAAPAEIAAAVMYLVSEHGAYVTGETLSINGGLYMH 248          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: KDUD_BACSU (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Bacillus subtilis GN=kduD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 48/169 (28.40%), Postives = 87/169 (51.48%), Query Frame = -2
Query:  211 KLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVC---GGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGF 708
            +++IL+NN G   R+   ++  E++  ++  N  S + L QLA   +   G   I+ ++S+    GG+ V      Y A+K A+  L +  A EWA   I+ N++ P ++ T  T+   +DE   +++  R P  R G+ ++I     FL   A+ Y+ G  ++ DGG+
Sbjct:   87 QIDILVNNAGIIHREKAEDFPEENWQHVLNVNLNSLFILTQLAGRHMLKRGHGKIINIASLLSFQGGILV----PAYTASKHAVAGLTKSFANEWAASGIQVNAIAPGYISTANTKPIRDDEKRNEDILKRIPAGRWGQADDIGGTAVFLASRASDYVNGHILAVDGGW 251          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 50/172 (29.07%), Postives = 89/172 (51.74%), Query Frame = -2
Query:  205 LDGKLNILINNVGTT-IRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPA 717
            L G ++IL++N          ++ T E +  ++  N ++   + +   P ++  G  S+V+++S+         G  Y  +K A+  L + LA E A  NIR N + P  + T  +++   D+A  + +  +  +RR GKP E + +V+FLC   ASYITG+T+   GG P+
Sbjct:   88 LHGGIDILVSNAAVNPFFGKLMDVTEEVWDKILDINVKAMALMTKAVVPEMEKRGGGSVVIVASIAAFNPFSGLGP-YNVSKTALVGLTKNLALELAAQNIRVNCLAPGLIKTSFSKALWEDKAQEENIIQKLRIRRLGKPEECAGIVSFLCSEDASYITGETVVVAGGAPS 258          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: DHG1_BACME (Glucose 1-dehydrogenase 1 OS=Bacillus megaterium GN=gdhI PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 58/196 (29.59%), Postives = 95/196 (48.47%), Query Frame = -2
Query:  193 LINQVSSLLD--GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSI-----------YGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAHAFF 741
            +IN V S +   GKL+++INN G     ++ E +  D++ ++ TN   A+         L +  A    + + + G  +V++  S+           Y A+KG M  +   LA E+A   IR N++ P  + TP+      D     +VE   PM   G+P EI+++ A+L    ASY+TG T+ ADGG   +  F
Sbjct:   72 VINLVQSSIKEFGKLDVMINNAGMENPVSSHEMSLSDWNKVIDTNLTGAF---------LGSREAIKYFVENDIKG--TVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMTQYPSF 256          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: DCXR_BOVIN (L-xylulose reductase OS=Bos taurus GN=DCXR PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 47/169 (27.81%), Postives = 81/169 (47.93%), Query Frame = -2
Query:  205 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPA 711
            G +++L+NN      +  +E T E +    + N  +   + Q+    L A GA  +++  S       +   S+Y +TKGA++ L +++A E     IR N+V P  V TP+ ++  +D    K +  R P+ R  +   +   + FL    +S  TG T+  DGGF A
Sbjct:   75 GPVDLLVNNAAVAFLQPFLEVTKEAYDMSFSVNLRAVIQVSQIVARGLIARGAPGVIVNVSSQASQRGLTNHSVYCSTKGALDTLTKVMAVELGPHKIRVNAVNPTVVMTPMGQAAWSDPQKAKAMLDRIPLGRFAEVENVVDTILFLLSDRSSMTTGSTVPVDGGFLA 243          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: HDHA_CLOSO (NADP-dependent 7-alpha-hydroxysteroid dehydrogenase OS=Clostridium sordellii PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15
Identity = 61/186 (32.80%), Postives = 96/186 (51.61%), Query Frame = -2
Query:  184 DGKLNILINNVGTTIRKATVEYTAED---FSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSI-YGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEI-SSLVAFLCMPAASYITGQTISADGGF----PAHAFFFPS 714
            +GK++IL+NN GT   +  ++    D   F  L   N  S Y L +L  P +  +   SIV +SSV  G S+ D   I YG +K  +N++ + +A ++A+  IR N+V P  + T    + + DE F K      P+ R G P +I +S++ F+    +SYITG  +   GG+    P +A F  S
Sbjct:   81 EGKIDILVNNFGTGRPEKDLDLVNGDEDTFFELFNYNVGSVYRLSKLIIPHMIENKGGSIVNISSV--GGSIPDISRIGYGVSKSGVNNITKQIAIQYAKYGIRCNAVLPGLIATDAAMNSMPDE-FRKSFLSHVPLNRIGNPEDIANSVLFFVPSEDSSYITGSILEVSGGYNLGTPQYAEFVGS 263          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15
Identity = 51/173 (29.48%), Postives = 87/173 (50.29%), Query Frame = -2
Query:  202 LDGKLNILINNVGTT-IRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAH 717
            L G ++ILI+N   +    + ++   E +  ++  N ++   L +   P +   G  SIV++SS+         G  Y  +K A+  L + LA E A+ N+R N + P  + T  +     D A  + ++    ++R GKP E + +V+FLC   ASYITG+T+   GG  +H
Sbjct:   88 LHGGVDILISNAAVSPFFGSLMDVPEEVWDKILDVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGP-YNVSKTALLGLTKNLALELAESNVRVNCLAPGLIRTSFSRVLWEDPARQESIKATFQIKRIGKPEECAGIVSFLCSEDASYITGETVVVAGGSLSH 259          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.777e-15
Identity = 52/180 (28.89%), Postives = 91/180 (50.56%), Query Frame = -2
Query:  205 LINQVSSLLDGKLNILINNVGTT-IRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPA 741
            L+N    L  G ++IL++N          ++ T E ++ +++ N  ++  + +   P ++  G  S+V++SSV G V     G  Y  +K A+  L +  A E A  NIR N + P  + T  +     ++A  + ++    +RR GKP +   +V+FLC   ASYI G+T+   GG P+
Sbjct:   81 LVNMALKLHQG-IDILVSNAAVNPFFGNLMDVTEEVWNKVLSINVTASAMMIKAVVPAMEKRGGGSVVIVSSVAGFVLFPSLGP-YNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTHFSSVLWKEKAREEMIKETMQIRRLGKPEDCVGIVSFLCSEDASYINGETVVVGGGTPS 258          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: HCDR_XANP2 (2-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecD PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 53/172 (30.81%), Postives = 86/172 (50.00%), Query Frame = -2
Query:  205 GKLNILINNVGTTIR-KATVEYTA--EDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPA 711
            G +++L+NN G T   +A V +T   E F  +MA N    +  C+   P +   GA  IV ++SV   V+     S Y  +KGA+  L + +A ++A   IR N+V P  + TP+T+  L+      +V  R P +  G   +++  V FL    A+Y+ G  +  DG + A
Sbjct:   79 GAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAF-PGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAYTA 249          
The following BLAST results are available for this feature:
BLAST of CN185542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
Y1350_MYCTU2.800e-1531.14Uncharacterized oxidoreductase Rv1350/MT1393 OS=My... [more]
PHAB_ACISR2.800e-1528.65Acetoacetyl-CoA reductase OS=Acinetobacter sp. (st... [more]
KDUD_BACSU2.800e-1528.402-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=B... [more]
DHRS4_RABIT2.800e-1529.07Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
DHG1_BACME2.800e-1529.59Glucose 1-dehydrogenase 1 OS=Bacillus megaterium G... [more]
DCXR_BOVIN2.800e-1527.81L-xylulose reductase OS=Bos taurus GN=DCXR PE=2 SV... [more]
HDHA_CLOSO3.657e-1532.80NADP-dependent 7-alpha-hydroxysteroid dehydrogenas... [more]
DHRS4_BOVIN3.657e-1529.48Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]
DHRS4_RAT4.777e-1528.89Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]
HCDR_XANP26.239e-1530.812-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185542 ID=CN185542; Name=CN185542; organism=Citrus sinensis; type=EST; length=742bp
TTTTTTTTTTTTTTTTTATGGAATAAAGCGACGACACTCGATAAAAGCCT
TATAAAAGACCATCCACAAGATGAGTCAAAAATCAAAACACTTACATGCT
GGCGGTTTATTAGGGCCGGAGAAATCACAACACTAAGTTATCAGATTCGA
AGATTTCAGAGAAGTGGACAAAATAAATCAGGTACTTGGGAAGAAGAATG
CATGCGCGGGAAATCCTCCGTCAGCGGAAATTGTCTGACCAGTTATATAA
GAGGCTGCAGGCATGCATAAAAATGCTACCAATGAAGATATCTCATTTGG
CTTCCCTGTGCGTCTCATTGGAGTTCGACCCTCGACTTCCTTTAAAAATG
CCTCATCATTCAGAAAAGATTCAGTTAAAGGAGTCGGGACGAACCAAGGT
GTGACAGAATTGGTCCTAATATTGTCTTGAGCCCACTCGCATGCCAAAAT
CCTCGCAAGATGGTTCATGGCTCCTTTCGTAGCTCCATATATGGATCCAG
CGTCAACAACTGACACCCCCCCACAAACAGAAGACATTAGAACAATACTT
GCTGCCCCCGAAGCTTTCAAAAGAGGATGTGCAAGTTGGCACAGATTGTA
AGCAGACTCAAAATTGGTAGCCATGAGAAACGAGAAATCTTCTGCTGTGT
ACTCCACAGTCGCCTTTCTTATAGTCGTCCCGACGTTGTTTATGAGAATG
TTAAGTTTTCCATCCAACAGAGAGGAGACTTGGTTTATAAGC
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