CN185542

Overview
NameCN185542
Unique NameCN185542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9518 contig Csv1_Contig9518:308..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: DHB8_CANFA (Estradiol 17-beta-dehydrogenase 8 OS=Canis familiaris GN=HSD17B8 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 52/177 (29.38%), Postives = 89/177 (50.28%), Query Frame = -2
Query:  214 LINQVSSLLDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGA-ASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 741
            L+ QV +      +++++  G T  +  +  + +D+  ++A N +  + + Q A   L +SG   SI+ +SS+ G V  V   + Y A+K  +  L +  A E  +  IR NSV P F+ TP+T+     +  L +V G  PM   G P +++  V FL    + YITG ++   GG
Sbjct:   83 LLEQVQACFSRPPSVVVSCAGLTRDEFLLRMSEDDWDRVIAVNLKGIFLVTQAAAQALVSSGCRGSIINISSIVGKVGNVGQTN-YAASKAGVIGLTQTAARELGRHGIRCNSVLPGFITTPMTQKV--PQKVLDKVIGMIPMGHLGDPEDVADAVTFLASEDSGYITGASVEVTGG 256          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: CPNA_COMTE (Cyclopentanol dehydrogenase OS=Comamonas testosteroni GN=cpnA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 50/169 (29.59%), Postives = 84/169 (49.70%), Query Frame = -2
Query:  202 KLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAH 708
            +L+ L+NN G    K   + + E++  +   N  S +   +     ++ +    IV +SS+ G V    A + Y A+KGA+    +  A + A  NIR NSV P  + TP+T+  L+     + + G T + R  +P E+S  V FL    AS++ G  +  DGG+ A+
Sbjct:   83 RLDALVNNAGILTLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAA-YEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQILDAPQSARALLGPTLLGRAAQPMEVSQAVLFLVSDEASFVHGSELVVDGGYTAN 250          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: CPNA_COMS9 (Cyclopentanol dehydrogenase OS=Comamonas sp. (strain NCIMB 9872) GN=cpnA PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 50/169 (29.59%), Postives = 84/169 (49.70%), Query Frame = -2
Query:  202 KLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAH 708
            +L+ L+NN G    K   + + E++  +   N  S +   +     ++ +    IV +SS+ G V    A + Y A+KGA+    +  A + A  NIR NSV P  + TP+T+  L+     + + G T + R  +P E+S  V FL    AS++ G  +  DGG+ A+
Sbjct:   83 RLDALVNNAGILTLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAA-YEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQILDAPQSARALLGPTLLGRAAQPMEVSQAVLFLVSDEASFVHGSELVVDGGYTAN 250          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: DHGA_BACME (Glucose 1-dehydrogenase A OS=Bacillus megaterium GN=gdhA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14
Identity = 53/184 (28.80%), Postives = 88/184 (47.83%), Query Frame = -2
Query:  193 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSI-----------YGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAHAFF 711
            G L+++INN G      + E + ++++ ++ TN   A+         L +  A    + + + G  +V++  S+           Y A+KG M  +   LA E+A   IR N++ P  + TP+      D     +VE   PM   GKP E++++ AFL    ASY+TG T+ ADGG   +  F
Sbjct:   84 GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAF---------LGSREAIKYFVENDIKG--NVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPEQRADVESMIPMGYIGKPEEVAAVAAFLASSQASYVTGITLFADGGMTKYPSF 256          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_SALTY (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhimurium GN=fabG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 51/167 (30.54%), Postives = 83/167 (49.70%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSI-YGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G+++IL+NN G T     +    ++++ ++ TN  S + L +     +       I+ + SV G +   +AG   Y A K  +   ++ LA E A   I  N V P F+ T +T +  +D+     +  + P  R G   EI+S VAFL    ASYITG+T+  +GG
Sbjct:   78 GEVDILVNNAGITRDNLLMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMG--NAGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQR--AGILAQVPAGRLGGAQEIASAVAFLASDEASYITGETLHVNGG 240          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_SALTI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhi GN=fabG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 51/167 (30.54%), Postives = 83/167 (49.70%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSI-YGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G+++IL+NN G T     +    ++++ ++ TN  S + L +     +       I+ + SV G +   +AG   Y A K  +   ++ LA E A   I  N V P F+ T +T +  +D+     +  + P  R G   EI+S VAFL    ASYITG+T+  +GG
Sbjct:   78 GEVDILVNNAGITRDNLLMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMG--NAGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQR--AGILAQVPAGRLGGAQEIASAVAFLASDEASYITGETLHVNGG 240          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: GRDH_ORYSJ (Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica GN=Os05g0140800 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 53/186 (28.49%), Postives = 97/186 (52.15%), Query Frame = -2
Query:  214 LINQVSSLLDGKLNILINNVGTTIRKATV-EYTAEDFSFLMATNFESAYNLCQLAHPLLK------ASGAASIVLMSSVC---GGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 741
            ++++V+    G ++IL+NN      + ++ + T +D   +  TN  S + + + A   ++       +G  SI+  SS+    G  +++D    Y ATKGA+    R LA + A++ IR N V P  + TPL  +   +E  +++   + PM R G+P+E++    FL    ASY++GQ +  +GG
Sbjct:  115 VVDEVAGAYGGAIDILVNNAAEQYERPSITDITEDDLERVFRTNIFSYFFMSKHAVKRMRDRRGGAGAGGCSIINTSSINAYKGNKTLLD----YTATKGAIVAFTRALALQLAEEGIRVNGVAPGPIWTPLIPASFAEEK-VRQFGSQVPMGRAGQPSEVAPSFVFLASDDASYMSGQMLHVNGG 295          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG4_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 4 (Fragment) OS=Brassica napus GN=bkr4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 50/167 (29.94%), Postives = 83/167 (49.70%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCM-PAASYITGQTISADGG 711
            G +++++NN G T+    +      +  +M  N    +   Q A  ++       I+ ++SV G +  +   + Y A K  +   ++  A E A  NI  N V P F+ + +T     D    K++ G  P+ R G+P +++ LV FL + PAASYITGQT + DGG
Sbjct:   91 GTIDVVVNNAGDTL---LIRMKKSQWDEVMDLNLTGVFLCSQAATKIMMKKRKGRIINIASVVGLIGNIGQAN-YAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDME--KKILGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQTFTIDGG 251          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: HSD_STREX (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Streptomyces exfoliatus PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 55/171 (32.16%), Postives = 85/171 (49.71%), Query Frame = -2
Query:  211 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEG---RTPMRRTG-KPNEISSLVAFLCMPAASYITGQTISADGGF 711
            G ++ L+NN G +        + E F  ++  N    +   +   P +K +G  SIV +SS  G + +    S YGA+K  +  L+++ A E   D IR NSV P    TP+T      E  +++ EG    TPM R G +P EI+  V  L    +SY+TG  ++ DGG+
Sbjct:   79 GSVDGLVNNAGISTGMFLETESVERFRKVVDINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSS-YGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTA-----ETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGW 243          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: GS39_BACSU (General stress protein 39 OS=Bacillus subtilis GN=ydaD PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 56/168 (33.33%), Postives = 84/168 (50.00%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATV-EYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAA-SIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G L+IL+NN G    K ++ + T+E       TNF S + L + A   LK   A  +   ++   G  +++D    Y ATKGA+N   R +A    +D IR N+V P  + TPL  +   +E  + +    TPM R G+P E       L    +SY+TGQT+  +GG
Sbjct:  119 GGLDILVNNAGEQHPKESIKDITSEQLHRTFKTNFYSQFYLTKKAIDYLKPGSAIINTTSINPYVGNPTLID----YTATKGAINAFTRTMAQALVKDGIRVNAVAPGPIWTPLIPATFPEET-VAQFGQDTPMGRPGQPVEHVGCYVLLASDESSYMTGQTLHVNGG 281          
The following BLAST results are available for this feature:
BLAST of CN185542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
DHB8_CANFA1.390e-1429.38Estradiol 17-beta-dehydrogenase 8 OS=Canis familia... [more]
CPNA_COMTE1.390e-1429.59Cyclopentanol dehydrogenase OS=Comamonas testoster... [more]
CPNA_COMS91.390e-1429.59Cyclopentanol dehydrogenase OS=Comamonas sp. (stra... [more]
DHGA_BACME1.815e-1428.80Glucose 1-dehydrogenase A OS=Bacillus megaterium G... [more]
FABG_SALTY2.371e-1430.543-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]
FABG_SALTI2.371e-1430.543-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]
GRDH_ORYSJ3.096e-1428.49Glucose and ribitol dehydrogenase homolog OS=Oryza... [more]
FABG4_BRANA3.096e-1429.943-oxoacyl-[acyl-carrier-protein] reductase 4 (Frag... [more]
HSD_STREX4.044e-1432.163-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
GS39_BACSU4.044e-1433.33General stress protein 39 OS=Bacillus subtilis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185542 ID=CN185542; Name=CN185542; organism=Citrus sinensis; type=EST; length=742bp
TTTTTTTTTTTTTTTTTATGGAATAAAGCGACGACACTCGATAAAAGCCT
TATAAAAGACCATCCACAAGATGAGTCAAAAATCAAAACACTTACATGCT
GGCGGTTTATTAGGGCCGGAGAAATCACAACACTAAGTTATCAGATTCGA
AGATTTCAGAGAAGTGGACAAAATAAATCAGGTACTTGGGAAGAAGAATG
CATGCGCGGGAAATCCTCCGTCAGCGGAAATTGTCTGACCAGTTATATAA
GAGGCTGCAGGCATGCATAAAAATGCTACCAATGAAGATATCTCATTTGG
CTTCCCTGTGCGTCTCATTGGAGTTCGACCCTCGACTTCCTTTAAAAATG
CCTCATCATTCAGAAAAGATTCAGTTAAAGGAGTCGGGACGAACCAAGGT
GTGACAGAATTGGTCCTAATATTGTCTTGAGCCCACTCGCATGCCAAAAT
CCTCGCAAGATGGTTCATGGCTCCTTTCGTAGCTCCATATATGGATCCAG
CGTCAACAACTGACACCCCCCCACAAACAGAAGACATTAGAACAATACTT
GCTGCCCCCGAAGCTTTCAAAAGAGGATGTGCAAGTTGGCACAGATTGTA
AGCAGACTCAAAATTGGTAGCCATGAGAAACGAGAAATCTTCTGCTGTGT
ACTCCACAGTCGCCTTTCTTATAGTCGTCCCGACGTTGTTTATGAGAATG
TTAAGTTTTCCATCCAACAGAGAGGAGACTTGGTTTATAAGC
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