CN185542

Overview
NameCN185542
Unique NameCN185542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9518 contig Csv1_Contig9518:308..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: GRDH1_ARATH (Glucose and ribitol dehydrogenase homolog 1 OS=Arabidopsis thaliana GN=At1g54870 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 59/176 (33.52%), Postives = 88/176 (50.00%), Query Frame = -2
Query:  199 GKLNILINNVGTTIRKATVEYTAED-FSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVC---GGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFL-CMPAASYITGQTISADGGFPAHA 711
            G++++LINN       +T+E   E     +  TN  S + L +  H L      +SI+  +SV    G  S++D    Y ATKGA+    R LA + A+  IR N V P  + TPL  +  N+E  +K      PM+R G+P E++    FL C   +SY TGQ +  +GG   +A
Sbjct:  120 GRIDVLINNAAEQYESSTIEEIDEPRLERVFRTNIFSYFFLTR--HALKHMKEGSSIINTTSVNAYKGNASLLD----YTATKGAIVAFTRGLALQLAEKGIRVNGVAPGPIWTPLIPASFNEEK-IKNFGSEVPMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGGAVVNA 288          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: DHB8_RAT (Estradiol 17-beta-dehydrogenase 8 OS=Rattus norvegicus GN=Hsd17b8 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 49/177 (27.68%), Postives = 89/177 (50.28%), Query Frame = -2
Query:  214 LINQVSSLLDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLA-HPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 741
            L+ QV +      +++++  G T  +  +  + ED+  ++A N +  + + Q A   L+ + G  SI+ +SS+ G V  +   + Y ++K  +  L +  A E  +  IR NSV P F+ TP+T+     E    +V    P+   G P +++ +VAFL    + YITG ++   GG
Sbjct:   83 LLEQVQACFFRPPSVVVSCAGITRDEFLLHMSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIVGKVGNIGQTN-YASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKM--PEKVKDKVTAMIPLGHMGDPEDVADVVAFLASEDSGYITGASVEVSGG 256          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: DHB8_MOUSE (Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus GN=Hsd17b8 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 48/177 (27.12%), Postives = 89/177 (50.28%), Query Frame = -2
Query:  214 LINQVSSLLDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLA-HPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 741
            L+ +V +      +++++  G T  +  +  + ED+  ++A N +  + + Q A   L+ + G  SI+ +SS+ G V  +   + Y ++K  +  L +  A E  +  IR NSV P F+ TP+T+     E    +V    P+   G P +++ +VAFL    + YITG ++   GG
Sbjct:   84 LLEEVQACFSRPPSVVVSCAGITRDEFLLHMSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIIGKVGNIGQTN-YASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKM--PEKVKDKVTAMIPLGHMGDPEDVADVVAFLASEDSGYITGASVEVSGG 257          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: NODG_RHIS3 (Nodulation protein G OS=Rhizobium sp. (strain N33) GN=nodG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = -2
Query:  214 LNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLC-QLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 705
            ++IL+NN G T     V  +  D+  ++  N  + + L  +L HP+++      I + S V  GV+     + Y A+K  M   ++ LA E A  NI  N V P F+ + +T+  LND+   + +    P RR G   E++S VA+L    A+Y+TGQTI  +GG
Sbjct:   81 VDILVNNAGITKDGLFVRMSDADWDTVLEVNLTAVFRLTRELTHPMMRRRHGRIINITSVV--GVTGNPGQTNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDK-LNDKQ-KEAIMAAIPTRRMGTSVEVASAVAYLASNEAAYVTGQTIHVNGG 241          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: MTDH_UROFA (Probable NADP-dependent mannitol dehydrogenase OS=Uromyces fabae GN=PIG8 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 49/169 (28.99%), Postives = 87/169 (51.48%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASG--AASIVLMSSVCGGVSVVDAGS-IYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G +  LI N G ++ K  ++Y  +DF+ +   N    +N  Q    +   +G    S+V++SS+   +         Y ++K A+++L + LA EWA+ +IR N ++P +V T  T S ++ +    + +G  P++R  +P E++     L  P ASY+TG     DGG
Sbjct:   86 GPVTGLIANAGVSVVKEALQYNKDDFNKIFDVNVFGVFNCAQAMAQIWTDTGFQRGSVVIISSMSSQICNRPLTQCFYNSSKAAVSNLGKCLAAEWAEKSIRVNMLSPGYVKTDQT-SHMDQKLRDFQADG-VPLKRFAEPEEMAGQAILLLSPKASYMTGGEYFVDGG 252          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_VIBHA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Vibrio harveyi GN=fabG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 52/169 (30.77%), Postives = 85/169 (50.30%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSI-YGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDE--AFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G ++IL+NN G T     +    ++++ ++ TN    Y + +     +    A  I+ + SV G +   +AG   Y A K  +    + +A E A   +  N+V P F+ T +T++  +D+  A L  V    P  R G P EI+S V FL  P A+YITG+T+  +GG
Sbjct:   78 GAIDILVNNAGITRDNLLMRMKDDEWNDIINTNLTPIYRMSKAVLRGMMKKRAGRIINVGSVVGTMG--NAGQTNYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDDQRAATLSNV----PAGRLGDPREIASAVVFLASPEAAYITGETLHVNGG 240          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_MYCTU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium tuberculosis GN=fabG PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 46/166 (27.71%), Postives = 83/166 (50.00%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G + +L++N G +     +  T E F  ++  N   A+ + Q A   ++ +    ++ + SV G   + +  + Y A+K  +  +AR +A E ++ N+  N V P ++ T +T +   DE   +      P +R G P E++ +V+FL    ASYI+G  I  DGG
Sbjct:   80 GPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQAN-YAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL--DERIQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGG 242          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG_MYCBO (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium bovis GN=fabG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 46/166 (27.71%), Postives = 83/166 (50.00%), Query Frame = -2
Query:  214 GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 711
            G + +L++N G +     +  T E F  ++  N   A+ + Q A   ++ +    ++ + SV G   + +  + Y A+K  +  +AR +A E ++ N+  N V P ++ T +T +   DE   +      P +R G P E++ +V+FL    ASYI+G  I  DGG
Sbjct:   80 GPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQAN-YAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL--DERIQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGG 242          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: FABG1_SYNY3 (3-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Synechocystis sp. (strain PCC 6803) GN=fabG1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 49/166 (29.52%), Postives = 84/166 (50.60%), Query Frame = -2
Query:  214 KLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCM-PAASYITGQTISADGG 708
            ++++L+NN G T     +    ED+  ++  N    +   +    L+    +  I+ ++SV G +      + Y A K  +    + +A E A   +  N+V P F+ T +TE+ LN E  L+ +    P+ R G+P E++  + FL   PAA+YITGQT + DGG
Sbjct:   84 RIDVLVNNAGITRDTLLLRMKLEDWQAVIDLNLTGVFLCTKAVSKLMLKQKSGRIINITSVAGMMGNPGQAN-YSAAKAGVIGFTKTVAKELASRGVTVNAVAPGFIATDMTEN-LNAEPILQFI----PLARYGQPEEVAGTIRFLATDPAAAYITGQTFNVDGG 243          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 49/172 (28.49%), Postives = 87/172 (50.58%), Query Frame = -2
Query:  205 LDGKLNILINNVGTT-IRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPA 717
            L G ++IL++N        + ++ T E +   +  N ++   + +   P ++  G  S+V++SS+    S     S Y  +K A+  L + LA E A  NIR N + P  + T  +     D+   + ++    +RR G+P + + +V+FLC   ASYITG+T+   GG P+
Sbjct:   88 LHGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAA-FSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGGTPS 258          
The following BLAST results are available for this feature:
BLAST of CN185542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
GRDH1_ARATH4.044e-1433.52Glucose and ribitol dehydrogenase homolog 1 OS=Ara... [more]
DHB8_RAT4.044e-1427.68Estradiol 17-beta-dehydrogenase 8 OS=Rattus norveg... [more]
DHB8_MOUSE4.044e-1427.12Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus ... [more]
NODG_RHIS35.281e-1432.73Nodulation protein G OS=Rhizobium sp. (strain N33)... [more]
MTDH_UROFA5.281e-1428.99Probable NADP-dependent mannitol dehydrogenase OS=... [more]
FABG_VIBHA5.281e-1430.773-oxoacyl-[acyl-carrier-protein] reductase OS=Vibr... [more]
FABG_MYCTU5.281e-1427.713-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
FABG_MYCBO5.281e-1427.713-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
FABG1_SYNY36.897e-1429.523-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Sy... [more]
DHRS4_PONAB6.897e-1428.49Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185542 ID=CN185542; Name=CN185542; organism=Citrus sinensis; type=EST; length=742bp
TTTTTTTTTTTTTTTTTATGGAATAAAGCGACGACACTCGATAAAAGCCT
TATAAAAGACCATCCACAAGATGAGTCAAAAATCAAAACACTTACATGCT
GGCGGTTTATTAGGGCCGGAGAAATCACAACACTAAGTTATCAGATTCGA
AGATTTCAGAGAAGTGGACAAAATAAATCAGGTACTTGGGAAGAAGAATG
CATGCGCGGGAAATCCTCCGTCAGCGGAAATTGTCTGACCAGTTATATAA
GAGGCTGCAGGCATGCATAAAAATGCTACCAATGAAGATATCTCATTTGG
CTTCCCTGTGCGTCTCATTGGAGTTCGACCCTCGACTTCCTTTAAAAATG
CCTCATCATTCAGAAAAGATTCAGTTAAAGGAGTCGGGACGAACCAAGGT
GTGACAGAATTGGTCCTAATATTGTCTTGAGCCCACTCGCATGCCAAAAT
CCTCGCAAGATGGTTCATGGCTCCTTTCGTAGCTCCATATATGGATCCAG
CGTCAACAACTGACACCCCCCCACAAACAGAAGACATTAGAACAATACTT
GCTGCCCCCGAAGCTTTCAAAAGAGGATGTGCAAGTTGGCACAGATTGTA
AGCAGACTCAAAATTGGTAGCCATGAGAAACGAGAAATCTTCTGCTGTGT
ACTCCACAGTCGCCTTTCTTATAGTCGTCCCGACGTTGTTTATGAGAATG
TTAAGTTTTCCATCCAACAGAGAGGAGACTTGGTTTATAAGC
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