CN185539

Overview
NameCN185539
Unique NameCN185539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.747e-16
Identity = 49/129 (37.98%), Postives = 76/129 (58.91%), Query Frame = 1
Query:   97 NYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPEL---NKEIGPENGLINEECPRLFKN--MKDYANIH 465
            +YY  C +PDL LGL  HSD +  TI+LQD   GLQVL D+ W  VP +  A++V +GD ++++TN  F S  HRV+ +    R SV  F++  L    +  GP   +++EE P  +++  + +YA  +
Sbjct:  221 HYYPPCPQPDLTLGLTKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISVACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYAKFY 349          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 1
Query:   91 RFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEG-LQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLF-----KNMKDYANIHW 468
            R NYY  CQRP   LG  PH D T  TI+ QD  G LQV  + +W ++   ++A +V +GD    ++NG +KS +HR V +++  R S+  F  PE++K + P   L++   PR +     +++ D+   H+
Sbjct:  205 RLNYYPPCQRPMETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHY 336          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = 1
Query:   91 RFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEG-LQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLF-----KNMKDYANIHW 468
            R NYY  CQRP   LG  PH D T  TI+ QD  G LQV  + +W ++   ++A +V +GD    ++NG +KS +HR V ++   R S+  F  PE++K + P   L++   PR +     +++ D+   H+
Sbjct:  205 RLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDASNPRAYPDFTWRSLLDFTQKHY 336          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = 1
Query:   91 RFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEG-LQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLF-----KNMKDYANIHW 468
            R NYY  CQRP   LG  PH D T  TI+ QD  G LQV  + +W ++   ++A +V +GD    ++NG +KS +HR V ++   R S+  F  PE++K + P   L++   PR +     +++ D+   H+
Sbjct:  205 RLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHY 336          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 51/170 (30.00%), Postives = 91/170 (53.53%), Query Frame = 1
Query:   13 KAMAKSLKLEENCFLNQFGNQSQY--QARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNK-EIGPENGLINEECPRLFKNMKDYANIHWEYYQKGQRALHTAK 510
            KA++  L LE +    + G   +   Q + NYY  C +P+L LG++ H+D +  T +L +   GLQ+  + +W T   + +++++ +GD +EI++NG +KS +HR + + EK R S  VF  P  +K  + P   +++ E P  F       +I  + + K Q  L + K
Sbjct:  185 KALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELVSEK 354          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 1
Query:    1 MITSKAMAKSLKLEENCFLNQFGNQSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEG-LQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEI 390
            ++  K+   S   +ENC  N          R N Y  C +P  V GL PH+D    TI+ QD+ G LQ++KD +W  V    +A+++ +GD  +  +NG++KS  HRV+T+ + ERFS   F  P  +  I
Sbjct:  172 VLAEKSGQNSSFFKENCVRNTC------YLRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQDQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVERFSTAYFMCPSYDAVI 296          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 50/143 (34.97%), Postives = 77/143 (53.85%), Query Frame = 1
Query:   55 LNQFGNQ-SQYQARF-NYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEGLQ--VLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFK--NMKDYANIH 465
            L  F N+ SQ Q    NYY  C  P   LG   H DG   T++ QD  GLQ  ++KD  W  V  I  A +V +G  ++++TN  F+  +HRVVT   ++R S+     P+ +  I P   L+N++ P L+K  +  ++A+I+
Sbjct:  184 LGYFDNELSQIQMMLTNYYPPCPDPSSTLGSGGHYDGNLITLLQQDLPGLQQLIVKDATWIAVQPIPTAFVVNLGLTLKVITNEKFEGSIHRVVTDPTRDRVSIATLIGPDYSCTIEPAKELLNQDNPPLYKPYSYSEFADIY 326          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 45/124 (36.29%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   28 SLKLEENCFLNQFGNQSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEG-LQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGP 396
            SL +E   +   F + S    R NYY  C  P+  LG  PH D T  TI+LQD+ G L+VL D +W  V  +  A+++ +GD    ++NG +KS +HR V +  +ER S+  F  P  ++ + P
Sbjct:  210 SLGVERGYYREFFADSSSIM-RCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRP 332          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 45/124 (36.29%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   28 SLKLEENCFLNQFGNQSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEG-LQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGP 396
            SL +E   +   F + S    R NYY  C  P+  LG  PH D T  TI+LQD+ G L+VL D +W  V  +  A+++ +GD    ++NG +KS +HR V +  +ER S+  F  P  ++ + P
Sbjct:  210 SLGVERGYYREFFADSSSIM-RCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRP 332          
BLAST of CN185539 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 44/123 (35.77%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   31 LKLEENCFLNQFGNQSQY--QARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEI 390
            L LEE     + G       Q + NYY  C +P+L LG++ H+D +  T +L +   GLQ+  + QW T   +  ++++ +GD +EI++NG +KS +HR V + EK RFS  +F  P   K I
Sbjct:  195 LGLEEGRLEKEVGGMEDLLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGQWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGVVNKEKVRFSWAIFCEPPKEKII 317          
The following BLAST results are available for this feature:
BLAST of CN185539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ACCH1_ARATH2.747e-1637.981-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GAO1B_WHEAT3.588e-1634.85Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAO1A_WHEAT4.686e-1634.85Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
GAO1D_WHEAT6.121e-1634.85Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
LDOX_ARATH1.044e-1530.00Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
G2OX8_ARATH1.364e-1535.11Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
HY6H_HYONI1.781e-1534.97Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
GAOX2_ORYSJ3.038e-1536.29Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI3.038e-1536.29Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
LDOX_PETHY3.967e-1535.77Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185539 ID=CN185539; Name=CN185539; organism=Citrus sinensis; type=EST; length=670bp
ATGATCACTTCCAAAGCCATGGCAAAGTCATTGAAGTTAGAGGAAAATTG
CTTCCTGAATCAGTTTGGGAATCAATCACAGTATCAAGCGAGGTTTAACT
ATTATGCACATTGTCAGAGACCTGATCTTGTCCTGGGCTTAAAACCCCAT
TCAGATGGAACCGGATACACCATTGTATTGCAGGACGAAGAAGGTCTCCA
AGTCCTCAAAGATGAGCAATGGTTTACAGTACCCAAAATATCTGAAGCTG
TCCTAGTCCTCATGGGTGACCAAATGGAGATAATGACTAATGGAATCTTC
AAGAGCCCAGTGCATAGAGTAGTTACTAGTGCAGAAAAGGAGAGGTTTTC
TGTAGTAGTATTTTATGCACCAGAATTGAACAAGGAGATTGGACCAGAAA
ATGGCTTAATCAACGAGGAATGCCCAAGATTATTCAAGAACATGAAAGAT
TACGCCAATATTCACTGGGAATACTACCAGAAAGGACAGCGAGCACTTCA
CACCGCAAAAGGGTGATATTGTCCTGTAGCATACTGATAGAATAGTCTCA
TGTTCTGTCACTTCTTTATCCTTCCATCTTTCTTTTCCTTCTTCGTTTTG
TGTGGTTGTGAAACTTAATCCTAGAGCTTTTAAATAAACACTACCTTATG
GGTGAAAAAAAAAAAAAAAA
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