CN185528

Overview
NameCN185528
Unique NameCN185528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9471 contig Csv1_Contig9471:189..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18
Identity = 69/240 (28.75%), Postives = 105/240 (43.75%), Query Frame = 2
Query:   98 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT-------------NFSE----------------------------------------GYGFIEFVSHAAAERVLQ------------TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622
            + S++  R+LW+GDL P  +E+ I  I+    + V  K+IR K+              N SE                                        GY F+EF +   A+  L             T N    P+ ++ FRLNWA+    +      P+F++FVGDL+   T+  L   F+  + SVK  +V+TD  TG S+ +GFVRFGDE E+ R++ EM+G     R +R+
Sbjct:   27 ETSTEPPRTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAENQQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFALSLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRV 266          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17
Identity = 52/168 (30.95%), Postives = 93/168 (55.36%), Query Frame = 2
Query:  122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            SL++GDL P + E+++  IF   G   S +V R+  T  S GY ++ F  H AA+  ++  N T  P   +  R+ W+      R++  G    IF+ +L  D+ +  L +TF +V+ ++  +KV TD  TG+SKG+G+V F ++     ++  +NG+L + + + +G
Sbjct:   36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFT--PIKGKLCRIMWSQRDPSLRKKGAG---NIFIKNLHPDIDNKALYDTF-SVFGNILSSKVATDE-TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVG 196          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 54/167 (32.34%), Postives = 88/167 (52.69%), Query Frame = 2
Query:  119 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 619
            R+L++G+L   + E  I  +F   G   S K+I    +N  + Y F+EF  H  A   L   NG ++   E   ++NWAT  + +++ D    F +FVGDL+ ++T   ++  F A +  +  A+VV D  TG+SKGYGFV F ++ +   ++  M G     R +R
Sbjct:    9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 169          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 50/159 (31.45%), Postives = 86/159 (54.09%), Query Frame = 2
Query:  122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 598
            SL++GDL+P + E+++  IF   G   S +V R+  T  S GY ++ F  H A  + ++  N T  P   +  R+ W+      R++  G    IF+ +L  D+ +  L +TF +V+  +  +K+ TD   G+SKG+GFV F +E     ++  +NG+L
Sbjct:   39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYT--PIKGRLCRIMWSQRDPSLRKKGSG---NIFIKNLHPDIDNKALYDTF-SVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGML 190          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 54/168 (32.14%), Postives = 89/168 (52.98%), Query Frame = 2
Query:  125 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGER--RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622
            L++G+L   ++   +A IF   G     +VI N++T+ S G+GF+   +   AE+ ++  NG  M   +       A  G+ ER  R D  P   ++VG+L  DV    L++ F + +  V  A+VV+DR TGRS+G+GFV    ESE   ++  ++G     R +R+
Sbjct:   57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLF-SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = 2
Query:   95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            P A S  + SL++GDL P + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +    R++ +MNG+L + R + +G
Sbjct:    3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVG 171          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = 2
Query:   95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            P A S  + SL++GDL P + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +    R++ +MNG+L + R + +G
Sbjct:    3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171          

HSP 2 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 47/182 (25.82%), Postives = 93/182 (51.10%), Query Frame = 2
Query:   95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDD----GPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            P     G+ +++I +L   ++   +   F   G  +S KV+ ++  N S+GYGF+ F +  AAER ++  NG  +     + ++    + + + R+ +      +FT +++ +   D+ D  L+E F   +      KV+TD + G+SKG+GFV F    +  +++ EMNG   + + + +G
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = 2
Query:   95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            P A S  + SL++GDL P + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +    R++ +MNG+L + R + +G
Sbjct:    3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171          

HSP 2 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 47/182 (25.82%), Postives = 93/182 (51.10%), Query Frame = 2
Query:   95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDD----GPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            P     G+ +++I +L   ++   +   F   G  +S KV+ ++  N S+GYGF+ F +  AAER ++  NG  +     + ++    + + + R+ +      +FT +++ +   D+ D  L+E F   +      KV+TD + G+SKG+GFV F    +  +++ EMNG   + + + +G
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = 2
Query:   95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            P A S  + SL++GDL P + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +    R++ +MNG+L + R + +G
Sbjct:    3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171          

HSP 2 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 46/182 (25.27%), Postives = 93/182 (51.10%), Query Frame = 2
Query:   95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDD----GPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            P     G+ +++I +L   ++   +   F   G  +S KV+ ++  N S+GYGF+ F +  AAER ++  NG  +     + ++    + + + R+ +      +FT +++ +   D+ D  L++ F   +      KV+TD + G+SKG+GFV F    +  +++ EMNG   + + + +G
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = 2
Query:   95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            P A S  + SL++GDL P + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +    R++ +MNG+L + R + +G
Sbjct:    3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171          

HSP 2 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 46/182 (25.27%), Postives = 93/182 (51.10%), Query Frame = 2
Query:   95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDD----GPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            P     G+ +++I +L   ++   +   F   G  +S KV+ ++  N S+GYGF+ F +  AAER ++  NG  +     + ++    + + + R+ +      +FT +++ +   D+ D  L++ F   +      KV+TD + G+SKG+GFV F    +  +++ EMNG   + + + +G
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264          
The following BLAST results are available for this feature:
BLAST of CN185528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
NGR1_YEAST1.155e-1828.75Negative growth regulatory protein NGR1 OS=Sacchar... [more]
PABP_CANGA3.715e-1730.95Polyadenylate-binding protein, cytoplasmic and nuc... [more]
TIAR_HUMAN4.851e-1732.34Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
PABP_YEAST1.081e-1631.45Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ROC1_SPIOL9.149e-1632.1428 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
PABPB_XENLA1.195e-1532.20Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABP1_RAT1.195e-1532.20Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE1.195e-1532.20Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP1_HUMAN1.195e-1532.20Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN1.195e-1532.20Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185528 ID=CN185528; Name=CN185528; organism=Citrus sinensis; type=EST; length=625bp
GCAACAACATCAAACTCCGGTGCCACCTCCGGTTGGATGGACTCCGCAGC
CGGTGCCTCCTCCATCTCAGCAGACGCAGCCCTACGGTGTCGCCCCCGAT
GCTTCCTCCGACGGGATCCGTTCTTTGTGGATCGGAGACTTGCAGCCGTG
GATGGAGGAGAGTTATATCGCCAGCATCTTCGGCCATACTGGAGAGTTTG
TTTCAGGAAAGGTTATTCGCAACAAGCAAACAAATTTTTCAGAGGGTTAT
GGTTTTATTGAGTTTGTTAGTCATGCTGCTGCAGAGAGGGTTTTGCAGAC
TTTTAATGGCACCCAAATGCCAAGCACTGAGCAAAACTTCAGACTGAATT
GGGCAACCTATGGGGCTGGTGAGAGGCGTCAAGATGATGGTCCTGATTTT
ACAATTTTTGTGGGAGATTTGGCTGCCGATGTAACTGACTATGTGCTACA
AGAAACATTTAGAGCTGTCTACTCGTCAGTGAAGGGTGCTAAAGTGGTCA
CTGATAGAACCACTGGACGCTCTAAGGGGTATGGTTTTGTGAGATTTGGG
GATGAAAGTGAACAATTGCGTTCCATGACCGAAATGAATGGCGTGCTCTG
CTCTACTAGACCTATGCGGATTGGG
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