CN185528
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11 Identity = 49/186 (26.34%), Postives = 89/186 (47.85%), Query Frame = 2 Query: 95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN---------WATYGAGE-RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 P S+ ++++G L +++ ++ F G V +VI + Q+ S+GYG+++F + AA+ + ++ N L+ +A AG Q P T+FVG+L+ + T+ L F ++ ++ TD +GR KG+G+V F D + + EMNG + RP R+ Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGC-GDIQSIRLPTDPQSGRLKGFGYVTFSD-IDSAKKCVEMNGHFIAGRPCRL 438
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11 Identity = 44/165 (26.67%), Postives = 84/165 (50.91%), Query Frame = 2 Query: 101 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGR-SKGYGFVRFGDESEQLRSMTEMNG 592 A+ D +L + L M + S+FG GE S K++R+K T S GYGF+ +V A++ + T NG ++ + + ++++A + R D ++V L + +++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG Sbjct: 29 AADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSSLPKTMNQKEMEQLF-SQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNG 185
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11 Identity = 42/164 (25.61%), Postives = 84/164 (51.22%), Query Frame = 2 Query: 101 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 592 A+ D +L + L M + S+FG G+ S K++R+K T S GYGF+ + A++ + T NG ++ + + ++++A + R D ++V L ++ +++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11 Identity = 42/160 (26.25%), Postives = 74/160 (46.25%), Query Frame = 2 Query: 113 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 592 G +L + L M + + S+F GE S K+IR+K S GYGF+ +++ AER + T NG ++ S + D +++ L +T +++ F + + ++V+ D+ TG S+G F+RF SE ++ NG Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQS-------KTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMF-LPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11 Identity = 46/179 (25.70%), Postives = 88/179 (49.16%), Query Frame = 2 Query: 125 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQD-------------DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 L++G+L M S ++ IF G + +++ ++ T+ S G+ F+ S A+ ++ F+G+Q+ + ++N+ G R+ D P ++V +L+ +T L++ F A AKV+ DR++GRS+G+GF+ F ++ MN V RP+R+ Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGG--RTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPH-KLYVANLSWALTSQGLRDAF-ADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRL 290
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11 Identity = 52/196 (26.53%), Postives = 90/196 (45.92%), Query Frame = 2 Query: 125 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM------------PSTEQNFRLNW-----ATYGAGERRQDDGPDF-------------TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 L++G+L ++ + +A +F G +VI +K + S G+GF+ + E Q FNG ++ P+ +N ++YG G +D F ++VG+L+ V D L+E F + +V AKVV DR +GRS+G+GFV + E ++ +NG+ R +R+ Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGG---RDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELF-SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRV 281
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11 Identity = 49/171 (28.65%), Postives = 86/171 (50.29%), Query Frame = 2 Query: 116 IRSLWIGDLQPWMEESYIASIFGHTGE--FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 + SL++GDL + E + +F G S V R+ T S GY ++ F ++ AER L T N T + + R+ W+ +R+ + G IFV +L V + +L +TF + + ++ KV ++ G SKGYG+V F +++ ++NG L +P+ + Sbjct: 183 LTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHG--KPCRIMWSYRDPTKRKTNVG---NIFVKNLEKGVDNAMLYDTFSS-FGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINV 345 The following BLAST results are available for this feature:
BLAST of CN185528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 107
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185528 ID=CN185528; Name=CN185528; organism=Citrus sinensis; type=EST; length=625bpback to top |