CN185528
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.561e-15 Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = 2 Query: 119 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR--------NKQTNFS-------EGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 619 R+L++G+L + E I +F G S K+I N FS + Y F+EF H A L NG ++ E ++NWAT + +++ D F +FVGDL+ ++T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ M G R +R Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15 Identity = 57/177 (32.20%), Postives = 88/177 (49.72%), Query Frame = 2 Query: 95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 P A S + SL++GDL P E+ + F G +S +V R+ T S GY ++ F A AER L T N + + R+ W+ R+ G IF+ +L + + L +TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G Sbjct: 3 PSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171 HSP 2 Score: 67.0106 bits (162), Expect = 8.862e-11 Identity = 46/182 (25.27%), Postives = 93/182 (51.10%), Query Frame = 2 Query: 95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDD----GPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 P G+ +++I +L ++ + F G +S KV+ ++ N S+GYGF+ F + AAER ++ NG + + ++ + + + R+ + +FT +++ + D+ D L++ F + KV+TD + G+SKG+GFV F + +++ EMNG + + + +G Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15 Identity = 57/169 (33.73%), Postives = 87/169 (51.48%), Query Frame = 2 Query: 119 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 R L++G+L + E + F G + K++ +K N + Y F+E+ A LQT NG Q+ E N ++NWA + + + DD F +FVGDL +V D L+ F+ S + G V+ D TG S+GYGFV F + + +M M G + RP+RI Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQI---ENNIVKINWA-FQSQQSSSDD--TFNLFVGDLNVNVDDETLRNAFKDFPSYLSG-HVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 235
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15 Identity = 51/175 (29.14%), Postives = 93/175 (53.14%), Query Frame = 2 Query: 101 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 A+ G SL++GDL + +S + FG G V+ +V R+ T S GYG++ F + A R +Q N +P + R+ ++ RR G IF+ +L + L +TF + + ++ KV D ++G+SKGYGFV++ +E +++ ++NG+L + + + +G Sbjct: 30 ATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN--YIPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFSS-FGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVG 197
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14 Identity = 52/177 (29.38%), Postives = 90/177 (50.85%), Query Frame = 2 Query: 119 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 619 ++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14 Identity = 52/177 (29.38%), Postives = 90/177 (50.85%), Query Frame = 2 Query: 119 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 619 ++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14 Identity = 56/177 (31.64%), Postives = 88/177 (49.72%), Query Frame = 2 Query: 95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 P A S + SL++GDL + E+ + F G +S +V R+ T S GY ++ F A AER L T N + + R+ W+ R+ G IF+ +L + + L +TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVG 171 HSP 2 Score: 68.9366 bits (167), Expect = 2.332e-11 Identity = 49/182 (26.92%), Postives = 91/182 (50.00%), Query Frame = 2 Query: 95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDD----GPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 P G+ +++I +L ++ + F G +S KV+ ++ N S+GYGF+ F + AAER + NG + + ++ + + + R+ + +FT +++ + D+ D L+E F Y KV+TD G+SKG+GFV F + +++ EMNG + + M +G Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLL----NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMF-GKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVG 264
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14 Identity = 54/168 (32.14%), Postives = 88/168 (52.38%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 SL+ GDL P + E+++ +F H VS +V R+ Q S GY +I F + A R ++ N T P ++ R+ + R G IF+ +L A + + L ETF + + ++ KV D TGRSKGYGFV+F E ++ ++NG+L + + + +G Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYT--PLFDRPIRIMLSNRDPSTRLSGKG---NIFIKNLDASIDNKALFETFSS-FGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVG 209
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14 Identity = 54/170 (31.76%), Postives = 86/170 (50.59%), Query Frame = 2 Query: 116 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 + SL++GDL P + E+ + F G +S +V R+ T S GY +I F A AER L T N + + R+ W+ G R+ G +F+ +L + + L +TF A + ++ KVV D S+GYGFV F + R++ MNG+L + R + +G Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDESIDNKALYDTFSA-FGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVG 171 HSP 2 Score: 74.7146 bits (182), Expect = 4.250e-13 Identity = 53/184 (28.80%), Postives = 93/184 (50.54%), Query Frame = 2 Query: 95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE------QNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 P G+ +++I +L ++ + F G +S KV+ ++ S GYGF+ F + AA R +QT NG + + ++ R YGA +FT +++ + D+ D L+E F A + + KV+ D TGRS+G+GFV +G+ E ++++EMNG + R + +G Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVM------EFTNVYIKNFGEDMDDKRLREIFSA-FGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG 264
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14 Identity = 55/170 (32.35%), Postives = 85/170 (50.00%), Query Frame = 2 Query: 116 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 + SL+IGDL P + E+ + F G +S +V R+ T S GY +I F A AER L T N + + R+ W+ G R+ G +F+ +L + + L +TF A + + KVV D S+GYGFV F + R++ MNG+L + R + +G Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDDSIDNKALYDTFSA-FGDILSCKVVCDEY--GSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVG 171 HSP 2 Score: 75.485 bits (184), Expect = 2.492e-13 Identity = 53/184 (28.80%), Postives = 94/184 (51.09%), Query Frame = 2 Query: 95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE------QNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 P G+ +++I +L ++ + F G+ +S KV+ ++ S GYGF+ F + AA R +QT NG + + ++ R YGA +FT +++ + D+ D L+E F A + + KV+ D + GRS+G+GFV +G+ E +++TEMNG + R + +G Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVM------EFTNVYIKNFGEDMDDKRLKEIFSA-FGNTLSVKVMMDNS-GRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVG 264 The following BLAST results are available for this feature:
BLAST of CN185528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 107
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN185528 ID=CN185528; Name=CN185528; organism=Citrus sinensis; type=EST; length=625bpback to top |