CN185528
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14 Identity = 50/178 (28.09%), Postives = 90/178 (50.56%), Query Frame = 2 Query: 92 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 AP+AS SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L + + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G Sbjct: 40 APNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 210
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.254e-14 Identity = 55/178 (30.90%), Postives = 88/178 (49.44%), Query Frame = 2 Query: 98 DASSDG--IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 +AS G + SL++GDL P + E+ + F G +S +V R+ T S GY +I F A AER L T N + Q R+ W+ G R+ G IF+ +L + + L +TF + + ++ KV D S+G+GFV F +++ MNG+L + R + +G Sbjct: 2 NASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALYDTF-STFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVG 171
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14 Identity = 50/178 (28.09%), Postives = 88/178 (49.44%), Query Frame = 2 Query: 92 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 AP S SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L A + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G Sbjct: 39 APSTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 209
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14 Identity = 50/177 (28.25%), Postives = 88/177 (49.72%), Query Frame = 2 Query: 95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 P AS SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L A + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 213
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14 Identity = 49/177 (27.68%), Postives = 88/177 (49.72%), Query Frame = 2 Query: 95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 P A+ SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L A + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 213
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14 Identity = 53/168 (31.55%), Postives = 84/168 (50.00%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 SL++GDL + ES + F G +S +V R+ T S GY ++ F A AER L T N + + R+ W+ RR G +F+ +L + + + +TF A + ++ KV TD G SKGYGFV F E S+ ++NG+L + + + +G Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLV--RNKPIRIMWSQRDPSLRRSGVG---NVFIKNLDRAIDNKAIYDTFSA-FGNILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG 163
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14 Identity = 49/178 (27.53%), Postives = 89/178 (50.00%), Query Frame = 2 Query: 92 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 AP A+ SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L + + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G Sbjct: 45 APAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 215
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14 Identity = 47/167 (28.14%), Postives = 89/167 (53.29%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 SL++G+L+P + E+ + IF G S +V R+ TN S GY ++ F H A + ++ N T + + R+ W+ R++ G I++ +L + + L ETF + + ++ KV TD G S+G+GFV F +ES+ ++ ++G+L + + + + Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKG--KPCRIMWSQRDPSLRKKGSG---NIYIKNLHPAIDNKSLHETF-STFGNILSCKVATDE-NGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYV 198
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.118e-13 Identity = 49/169 (28.99%), Postives = 88/169 (52.07%), Query Frame = 2 Query: 89 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 592 +A D D G +L + L M + + S+F GE S K+IR+K S GYGF+ +V+ AER + T NG ++ S + ++++A + + D +++ L +T +++ F + + + ++V+ D+TTG S+G F+RF SE ++T NG Sbjct: 9 MAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13 Identity = 48/168 (28.57%), Postives = 86/168 (51.19%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 SL++GDL P + E ++ IF G + +V R+ T S Y ++ + + A AER L T N T P + R+ W+ R+ G +F+ +L + L +TF A + ++ KVVTD SKG+GFV + + +++ ++NG++ + + + +G Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNT--PIRGKACRIMWSQRDPSLRKSGVG---NVFIKNLDKGIDHKALYDTFSA-FGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKVFVG 171 The following BLAST results are available for this feature:
BLAST of CN185528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 107
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185528 ID=CN185528; Name=CN185528; organism=Citrus sinensis; type=EST; length=625bpback to top |