CN185528
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12 Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 2 Query: 284 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 +R ++T GT S E L W + DF IF GDL +V D +L F Y S AKV+ D+ TG++KGYGFV F D ++ +R+M EMNG +RP+++ Sbjct: 269 KRCIRTAAGT---SWEDQSLLEW-----------ESDDFRIFCGDLGNEVNDDILARAFSR-YPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKL 366
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12 Identity = 49/173 (28.32%), Postives = 84/173 (48.55%), Query Frame = 2 Query: 107 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 SD SL++G+L P + E+ + IF G+ S +V R+ T S GY ++ F E+ ++ N + + + R+ W+ RR DG IF+ +L + + L +TF A + + KV TD G SK +GFV + ++ +NG+L + R + +G Sbjct: 47 SDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEG--RPCRIMWSQRDPSLRRNGDG---NIFIKNLHPAIDNKALHDTFTA-FGKILSCKVATD-DMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVG 212
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.755e-12 Identity = 45/172 (26.16%), Postives = 88/172 (51.16%), Query Frame = 2 Query: 125 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG------PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 L++G+L ++ +A +F G +VI N++T+ S G+GF+ + A++ ++ ++ + N RL A + + P + I+VG++ D+ D L++ F + + V A+VV DR +GRS+G+GFV E+E ++ ++G R +R+ Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDL-----NGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRV 264
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12 Identity = 47/172 (27.33%), Postives = 86/172 (50.00%), Query Frame = 2 Query: 125 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP------DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 L++G+L ++ +A +F G +VI N+ T+ S G+GF+ + AE+ ++ +N + N RL A + + P + I+VG++ + D L++ F + + V A+VV DR TGRS+G+GFV E+E ++ ++G R +R+ Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDV-----NGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLF-SEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRV 303
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12 Identity = 45/168 (26.79%), Postives = 83/168 (49.40%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + S E+ L+ N T + + R+ W+ R+ G +F+ +L + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDHAIDNKALHDTF-AAFGNILSCKVAQDE-LGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVG 209
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12 Identity = 46/168 (27.38%), Postives = 83/168 (49.40%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + A ER L N T + + R+ W+ R+ G +F+ +L + + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG 203
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 52/191 (27.23%), Postives = 86/191 (45.03%), Query Frame = 2 Query: 86 GVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM------------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 GV + + +++G+L + + +A +F G +VI +K T S G+GF+ S E Q FNG ++ P +N + G G + ++VG+LA V L ET + V AKVV DR +GRS+G+GFV + E ++ ++GV + R +R+ Sbjct: 76 GVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSN----RVYVGNLAWGVDQDAL-ETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 2 Query: 395 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 DF IF GDL +V D +L F Y S AKVV D+ TG++KGYGFV F D ++ +R+M EMNG +RP+++ Sbjct: 302 DFRIFCGDLGNEVNDDILARAFSR-YPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKL 376
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 46/168 (27.38%), Postives = 82/168 (48.81%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 SL++G+L P + E+ + IF G S +V R+ T S GY ++ F + A R L+ N P E+ R+ W+ R+ G I++ +L + + L +TF A + + K+ TD G S+G+GFV + ++ +NG+L + + + +G Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELN--YSPIKERPCRIMWSQRDPALRKTGAG---NIYIKNLDPAIDNKALHDTFSA-FGQILSCKIATDE-FGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVG 207
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 46/177 (25.99%), Postives = 83/177 (46.89%), Query Frame = 2 Query: 95 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 P ++ SL++G+L P + E+ + +F G S +V R+ T S GY ++ F + E+ L N T + + R+ W+ R+ G +F+ +L + + L +TF A + + KV D G +KGYGFV F ++ +NG+L + + + +G Sbjct: 72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKG--RPCRIMWSQRDPSLRKMGTG---NVFIKNLDPAIDNKALHDTFSA-FGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVG 241 The following BLAST results are available for this feature:
BLAST of CN185528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 107
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185528 ID=CN185528; Name=CN185528; organism=Citrus sinensis; type=EST; length=625bpback to top |