CN185528
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 50/159 (31.45%), Postives = 82/159 (51.57%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 598 SL++GDL + E + F G +S ++ R++ T S GY ++ F+ A A++ L T N + ++ RL W+ A RR G +F+ +L + + L E F A + + +KV++D SKGY FV F ++S R++ EMNG L Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKG--KSIRLMWSQRDAYLRRSGIG---NVFIKNLDKSIDNKTLYEHFSA-FGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMNGKL 161
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 43/163 (26.38%), Postives = 83/163 (50.92%), Query Frame = 2 Query: 104 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 592 + D +L + L M + S+FG GE S K++R+K T S GYGF+ +V A++ + T NG ++ + + ++++A + R D ++V L + +++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG Sbjct: 29 ADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSSLPKTMNQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 183
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 46/169 (27.22%), Postives = 87/169 (51.48%), Query Frame = 2 Query: 89 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNF-SEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 592 V + + D +L + L M + + S+FG GE S K++R+K T S GYGF+ ++ AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG Sbjct: 56 VESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12 Identity = 54/193 (27.98%), Postives = 87/193 (45.08%), Query Frame = 2 Query: 86 GVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM------------PSTEQN--FRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 GV + + +++G+L + + +A +F G +VI +K T S G+GF+ S E Q FNG ++ P +N FR N + G ++VG+LA V L ET + V AKVV DR +GRS+G+GFV + E ++ ++GV + R +R+ Sbjct: 76 GVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDAL-ETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12 Identity = 46/168 (27.38%), Postives = 83/168 (49.40%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 SL++G+L P + E+ + IF G+ S +V R+ + S GY ++ + + E+ ++ N P + R+ W+ RR DG IF+ +L + + L +TF A + + KV TD G+SK +GFV + ++ +NG+L + R + +G Sbjct: 53 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELN--YNPIEGRPCRIMWSQRDPSARRSGDG---NIFIKNLHPAIDNKALHDTFSA-FGKILSCKVATDE-FGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVG 213
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12 Identity = 50/183 (27.32%), Postives = 87/183 (47.54%), Query Frame = 2 Query: 92 APDASSDG-----IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625 A DASS G SL++GDL P + E + F S ++ ++ + S YG+ F+S A ++ N + + + R+ W+ RR G +FV +L VT+ VLQ+ F+ + ++ KV T G+S+GYGFV+F E ++ +N + + + + +G Sbjct: 10 AADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLL--NGKMIRVMWSVRAPDARRNGVG---NVFVKNLPESVTNAVLQDMFKK-FGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVG 185
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12 Identity = 41/173 (23.70%), Postives = 89/173 (51.45%), Query Frame = 2 Query: 122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA-TYGAGERRQDDG-----PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 ++++G L +++ ++ F H G + +VI + T+ S GYG+++F + + AE+ +Q G ++ N ++ + G +R + G P T+F+G+L+ + + E F A + V ++ T T + KG+G+V+F + + +++ + G RP+R+ Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELF-AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRL 340
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11 Identity = 54/196 (27.55%), Postives = 90/196 (45.92%), Query Frame = 2 Query: 125 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM------------PSTEQNFRLNW-----ATYGAGERRQDDGPDF-------------TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622 L++G+L ++ + +A +F G +VI +K T S G+GF+ + E Q FNG ++ P+ +N ++YG G +D F ++VG+L+ V D L+E F + +V AKVV DR +GRS+G+GFV + E ++ +NGV R +R+ Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGG---RDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELF-SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRV 280
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11 Identity = 43/160 (26.88%), Postives = 80/160 (50.00%), Query Frame = 2 Query: 113 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 592 G +L + L M + + S+F GE S K+IR+K S GYGF+ +++ AER + T NG ++ S + ++++A + D +++ L +T +++ F + + ++V+ D+ TG S+G F+RF SE ++ NG Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQS--KTIKVSFA-----RPSSETIKDANLYISGLPRTMTQKDVEDMF-LPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11 Identity = 42/159 (26.42%), Postives = 82/159 (51.57%), Query Frame = 2 Query: 152 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL--CSTRPMRI 622 M++ + S+F G + +++R+ +T +S GYGF++F S A A R + NG + + ++++A G + R D ++V +L+ +TD L ET Y + ++ D+ TG +G F+RF E +++ +N V+ T+P+ + Sbjct: 89 MQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITV--RNKRIKVSFARPGGEQLR-----DTNLYVTNLSRSITDEQL-ETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGGTQPLTV 239 The following BLAST results are available for this feature:
BLAST of CN185528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 107
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185528 ID=CN185528; Name=CN185528; organism=Citrus sinensis; type=EST; length=625bpback to top |