CN185528

Overview
NameCN185528
Unique NameCN185528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9471 contig Csv1_Contig9471:189..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 51/186 (27.42%), Postives = 87/186 (46.77%), Query Frame = 2
Query:  125 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM-------------PSTEQNF----RLNWATYGA---GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622
            L++G+L   ++ + +A +F   G     +VI +K T  S G+GF+   S +  E   Q FNG ++             P  E  F    R ++ + G+   G      G    ++VG+L+  V D  L+  F +    V  A+V+ DR +GRSKG+GFV +    E   ++  ++G     R +R+
Sbjct:   93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLF-SEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: RBM42_XENLA (RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 42/113 (37.17%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  284 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 622
            +R ++T  GT   S E    L W           +  DF IF GDL  +V D +L   F   Y S   AKV+ D+ TG++KGYGFV F D ++ +R+  EMNG    +RP+++
Sbjct:  269 KRCIRTAAGT---SWEDQSLLEW-----------EPDDFRIFCGDLGNEVNDDILARAFSR-YPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRATREMNGKYVGSRPIKL 366          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 48/173 (27.75%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  113 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            G+ +++I +L   ++   +  +F   G  +S KV+ +   N S+GY ++ F S AAA R +   NG ++ + +    R  +    A E R  D   FT +FV ++  D+ D  L+E F   Y   +  KV+ D  +G+SKG+GFVR+       +++ +++G     + + +G
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 48/173 (27.75%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  113 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            G+ +++I +L   ++   +  +F   G  +S KV+ +   N S+GY ++ F S AAA R +   NG ++ + +    R  +    A E R  D   FT +FV ++  D+ D  L+E F   Y   +  KV+ D  +G+SKG+GFVR+       +++ +++G     + + +G
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 48/173 (27.75%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  113 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            G+ +++I +L   ++   +  +F   G  +S KV+ +   N S+GY ++ F S AAA R +   NG ++ + +    R  +    A E R  D   FT +FV ++  D+ D  L+E F   Y   +  KV+ D  +G+SKG+GFVR+       +++ +++G     + + +G
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 48/173 (27.75%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  113 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            G+ +++I +L   ++   +  +F   G  +S KV+ +   N S+GY ++ F S AAA R +   NG ++ + +    R  +    A E R  D   FT +FV ++  D+ D  L+E F   Y   +  KV+ D  +G+SKG+GFVR+       +++ +++G     + + +G
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 48/173 (27.75%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  113 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            G+ +++I +L   ++   +  +F   G  +S KV+ +   N S+GY ++ F S AAA R +   NG ++ + +    R  +    A E R  D   FT +FV ++  D+ D  L+E F   Y   +  KV+ D  +G+SKG+GFVR+       +++ +++G     + + +G
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 48/173 (27.75%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  113 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            G+ +++I +L   ++   +  +F   G  +S KV+ +   N S+GY ++ F S AAA R +   NG ++ + +    R  +    A E R  D   FT +FV ++  D+ D  L+E F   Y   +  KV+ D  +G+SKG+GFVR+       +++ +++G     + + +G
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 42/164 (25.61%), Postives = 84/164 (51.22%), Query Frame = 2
Query:  101 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 592
            A+ D   +L +  L   M +    S+FG  G+  S K++R+K T  S GYGF+ +     A++ + T NG ++ +  +  ++++A   +   R     D  ++V  L   ++   +++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG
Sbjct:   33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of CN185528 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 46/168 (27.38%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  122 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 625
            SL++GDL P + E+ +   F   G  +S ++ R+K T  S GY ++ +     A+R L+T N   +    +  R+ W+      R+   G    +F+ +L   + +  L   F A + ++   KV  D      KGYGFV F  +    R++  MNG+  + R + +G
Sbjct:    3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIFSA-FGNILSCKVACDEK--GPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVG 162          
The following BLAST results are available for this feature:
BLAST of CN185528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
ROC1_ARATH1.786e-1127.42Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
RBM42_XENLA1.786e-1137.17RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 ... [more]
PABP5_PONPY1.786e-1127.75Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]
PABP5_PANTR1.786e-1127.75Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]
PABP5_MACMU1.786e-1127.75Polyadenylate-binding protein 5 OS=Macaca mulatta ... [more]
PABP5_HYLLA1.786e-1127.75Polyadenylate-binding protein 5 OS=Hylobates lar G... [more]
PABP5_HUMAN1.786e-1127.75Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO1.786e-1127.75Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
ELAV3_HUMAN1.786e-1125.61ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
PAP1M_HUMAN2.332e-1127.38Polyadenylate-binding protein 1-like 2 OS=Homo sap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001H18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185528 ID=CN185528; Name=CN185528; organism=Citrus sinensis; type=EST; length=625bp
GCAACAACATCAAACTCCGGTGCCACCTCCGGTTGGATGGACTCCGCAGC
CGGTGCCTCCTCCATCTCAGCAGACGCAGCCCTACGGTGTCGCCCCCGAT
GCTTCCTCCGACGGGATCCGTTCTTTGTGGATCGGAGACTTGCAGCCGTG
GATGGAGGAGAGTTATATCGCCAGCATCTTCGGCCATACTGGAGAGTTTG
TTTCAGGAAAGGTTATTCGCAACAAGCAAACAAATTTTTCAGAGGGTTAT
GGTTTTATTGAGTTTGTTAGTCATGCTGCTGCAGAGAGGGTTTTGCAGAC
TTTTAATGGCACCCAAATGCCAAGCACTGAGCAAAACTTCAGACTGAATT
GGGCAACCTATGGGGCTGGTGAGAGGCGTCAAGATGATGGTCCTGATTTT
ACAATTTTTGTGGGAGATTTGGCTGCCGATGTAACTGACTATGTGCTACA
AGAAACATTTAGAGCTGTCTACTCGTCAGTGAAGGGTGCTAAAGTGGTCA
CTGATAGAACCACTGGACGCTCTAAGGGGTATGGTTTTGTGAGATTTGGG
GATGAAAGTGAACAATTGCGTTCCATGACCGAAATGAATGGCGTGCTCTG
CTCTACTAGACCTATGCGGATTGGG
back to top