CN185510

Overview
NameCN185510
Unique NameCN185510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4526 contig Csv1_Contig4526:47..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.787e-72
Identity = 132/219 (60.27%), Postives = 158/219 (72.15%), Query Frame = 1
Query:   34 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELA 690
            KFFVGGNWKCNGT E + K+VS LN                 F+++  VKSSL     V+AQN W+ KGGAFTGEISAE LV++G  WVILGHSERR ++ E +EF+G K AYALSQ LKV+AC+GE LE+REAG T DV   Q KA AD ++ W+N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S ++A+  RIIYGGSVN ANC ELA
Sbjct:   48 KFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPP--FIYIDQVKSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELA 264          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.078e-70
Identity = 133/219 (60.73%), Postives = 155/219 (70.78%), Query Frame = 1
Query:   34 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELA 690
            KFFVGGNWKCNGT + + K++S LN                 F+++  VKSSL     ++ QN WV KGGAFTGEIS E L +LG  WVILGHSERR ++ E +EF+G K AYALS+GL VIAC+GE LE+REAG T DV  AQ KA AD V SW NIV+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGSVNG N  ELA
Sbjct:   65 KFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPP--FVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELA 281          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.046e-70
Identity = 132/219 (60.27%), Postives = 156/219 (71.23%), Query Frame = 1
Query:   34 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELA 690
            KFFVGGNWKCNGT + + K+VS LN  +              FL+L  VKSSL     ++ QN WV KGGAFTGEIS E L ++G  WVILGHSERR ++ E ++F+G K AYAL++GL VIAC+GE LE+REAG T DV   Q KA AD V SW NIV+AYEPVWAIGTGKVA+P QAQEVH  +R+WL  N S E+A+ TRIIYGGSVNG N  ELA
Sbjct:   64 KFFVGGNWKCNGTKDLISKLVSDLNSAKLEPDVDVVVAPP--FLYLDQVKSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERRHVIGEDDQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELA 280          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 2.629e-65
Identity = 129/223 (57.85%), Postives = 151/223 (67.71%), Query Frame = 1
Query:   25 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            MGRKF VGGNWK NG    +  +  VL  G               +L L   +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR I  ES+E + DKVA+AL++GLKVIAC+GETL++REAG T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK A+P QAQEVH  LRKW   N S +++AA RI YGGSV  ANC+ELAA
Sbjct:    1 MGRKFCVGGNWKMNGDKASIADLCKVLTTGPLNADTEVVVGCPAPYLTLA--RSQLPDSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAA 221          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.305e-64
Identity = 123/222 (55.41%), Postives = 152/222 (68.47%), Query Frame = 1
Query:   28 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            GRKFFVGGNWK NG  + ++++ + LN  +               ++L   +S L P+  VAAQNC+    GAFTGEIS  M+ + G+ WVILGHSERR +  ES+E +G KVA+AL  GL VIAC+GE L++REAG T  VV AQTK IAD V  WS +VLAYEPVWAIGTGK A+P QAQEVH +LR+WL  N S  +A + RIIYGGSV G  CKELA+
Sbjct:    3 GRKFFVGGNWKMNGDKKSIEELANTLNSAKLNPDTEVVCGAPT--IYLDYARSKLDPNIDVAAQNCYKVAKGAFTGEISPAMIKDCGVKWVILGHSERRHVFGESDELIGQKVAHALENGLGVIACIGEKLDEREAGITEKVVFAQTKFIADNVKDWSKVVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCKELAS 222          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.442e-63
Identity = 122/221 (55.20%), Postives = 150/221 (67.87%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            RKFFVGGNWK NG  + + ++++ LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+ALS+GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+
Sbjct:    4 RKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELAS 222          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.213e-63
Identity = 121/221 (54.75%), Postives = 149/221 (67.42%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            RKFFVGGNWK NG  + + ++++ LN G+               ++L   +  L   F V+AQNC+    GAFTGEIS  M+ + G  WVILGHSERR +  ES+E +G KVA+ALS+ + VI C+GE L+QREAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR+WL  N S ++A + RIIYGGSV G  CKEL A
Sbjct:    4 RKFFVGGNWKMNGDKKSLTELINTLNSGKISADTEVVCGAPT--IYLDFARQKLDAKFAVSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGESDELIGQKVAHALSENVGVIGCIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWLKTNVSEDVAKSVRIIYGGSVTGGTCKELGA 222          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.213e-63
Identity = 121/221 (54.75%), Postives = 149/221 (67.42%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            RKFFVGGNWK NG  + + +++  LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+
Sbjct:    5 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDYGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELAS 223          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_PANTR (Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 3.213e-63
Identity = 121/221 (54.75%), Postives = 149/221 (67.42%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            RKFFVGGNWK NG  + + +++  LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+
Sbjct:    5 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELAS 223          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 3.213e-63
Identity = 121/221 (54.75%), Postives = 149/221 (67.42%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            RKFFVGGNWK NG  + + +++  LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+
Sbjct:    5 RKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELAS 223          
The following BLAST results are available for this feature:
BLAST of CN185510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_SECCE3.787e-7260.27Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIC_ARATH2.078e-7060.73Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_FRAAN6.046e-7060.27Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_CULTA2.629e-6557.85Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPISB_DANRE1.305e-6455.41Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_RABIT1.442e-6355.20Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPIS_XENTR3.213e-6354.75Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_PONAB3.213e-6354.75Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]
TPIS_PANTR3.213e-6354.75Triosephosphate isomerase OS=Pan troglodytes GN=TP... [more]
TPIS_MACMU3.213e-6354.75Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185510 ID=CN185510; Name=CN185510; organism=Citrus sinensis; type=EST; length=693bp
CACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTCTTCGTCGGCGG
TAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAAGATAGTGAGCG
TACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTT
AGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGA
TTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCA
CCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTATTCCTTGGGTC
ATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTT
TGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTG
CTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGAT
GTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTC
AAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGG
TTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGG
CTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTA
CGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCA
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