CN185510

Overview
NameCN185510
Unique NameCN185510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4526 contig Csv1_Contig4526:47..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.658e-43
Identity = 92/221 (41.63%), Postives = 127/221 (57.47%), Query Frame = 1
Query:   25 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKEL 687
            M RK+FV  NWKCNGT E +K + +  N                   +    +  L+  F    QN      G++TGE+SAE+  +L I +VI+GH ERR   +E++E V +K+  +L   LK + C GE+LEQRE   T++V+  Q KA  D + ++ N++LAYEP+WAIGTGK ATP QAQ VH E+RK +      + A   RI+YGGSVN  NC  L
Sbjct:    1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHY-DHTRKLLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSL 220          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.301e-43
Identity = 102/223 (45.74%), Postives = 128/223 (57.40%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            RK  V GNWK N T +E   +   LNE                F+ L  V   +      V A+NC  K+ GA+TGE+SA M+ + G  +VILGHSERR    E+ E + DKV  AL+ GL  I C+GE LE+REA    +VVAAQ  ++ D     +S IVLAYEPVWAIGTGK A+PAQAQE+H  +R  +      EIA  T I+YGGS   +N KEL A
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFA 224          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.301e-43
Identity = 102/223 (45.74%), Postives = 128/223 (57.40%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            RK  V GNWK N T +E   +   LNE                F+ L  V   +      V A+NC  K+ GA+TGE+SA M+ + G  +VILGHSERR    E+ E + DKV  AL+ GL  I C+GE LE+REA    +VVAAQ  ++ D     +S IVLAYEPVWAIGTGK A+PAQAQE+H  +R  +      EIA  T I+YGGS   +N KEL A
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFA 224          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.552e-41
Identity = 99/224 (44.20%), Postives = 124/224 (55.36%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKEL 687
            R+  + GNWK NGT +    + + + +G               F  L  V+  +      + AQN  V   GAFTGEIS EML ++G  +VILGHSERR +  E+NE V  KVA A   GL  I CVGETLEQREA  TM V+  Q  A    +    +    +V+AYEPVWAIGTGKVA+ AQAQE H  +R  L       +A A RI+YGGS+   N KEL
Sbjct:    2 RRALIAGNWKLNGTTQAATALATAVRDGVAANKPDCDVLVCPTFTVLSAVQGVVAGSGVDLGAQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASAYRDGLTPILCVGETLEQREAEQTMQVLEQQLLACLPVLPADAAKQQQLVVAYEPVWAIGTGKVASTAQAQEAHAFIRGLLAKELGANVADAVRILYGGSMKPDNAKEL 225          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.647e-41
Identity = 99/225 (44.00%), Postives = 134/225 (59.56%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRP-DFHVAAQNCWVKKG-GAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            R+  V GNWK NGT   V +++      +              F+ +  V   +      V AQ+C ++ G GA TGE+SA+ LV+LG  WV++GHSERRL+L E++E V  K A A + GLK + C+GETLE+REAG T++VVA Q   + D   V ++ + V+AYEPVWAIG+G  ATP QAQEVH  +R  L A +   IA   R++YGGSV   N  EL A
Sbjct:    2 RRPMVAGNWKMNGTRASVAELIESFR--RQALPAAVEIAVFPSFVHVSQVLDVVDGVQVSVGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIRDQL-ARSDRRIAEGVRLLYGGSVKADNAAELFA 223          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_PORGI (Triosephosphate isomerase OS=Porphyromonas gingivalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.457e-41
Identity = 95/222 (42.79%), Postives = 130/222 (58.56%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKEL 687
            RK  V GNWK N T +E   +   L+                 F+ L  + +++      VAA+NC  K+ GA+TGE+SA M+ + G  +VI+GHSERR   +E++  + +KV  ALS GL  I CVGE LE+REAG   +VVA Q +     +  + ++ ++LAYEPVWAIGTGK AT  QAQE+H  +RK + A    E+A    I+YGGS N AN KEL
Sbjct:    2 RKNIVAGNWKMNKTLQEGLALAKELDAALKGRTINCDVIIGTPFIHLASIAAAIDTTRIGVAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKEL 223          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_PORG3 (Triosephosphate isomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tpiA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.457e-41
Identity = 95/222 (42.79%), Postives = 130/222 (58.56%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKEL 687
            RK  V GNWK N T +E   +   L+                 F+ L  + +++      VAA+NC  K+ GA+TGE+SA M+ + G  +VI+GHSERR   +E++  + +KV  ALS GL  I CVGE LE+REAG   +VVA Q +     +  + ++ ++LAYEPVWAIGTGK AT  QAQE+H  +RK + A    E+A    I+YGGS N AN KEL
Sbjct:    2 RKNIVAGNWKMNKTLQEGLALAKELDAALKGRTISCDVIIGTPFIHLASIAAAIDTTRIGVAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKEL 223          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_PROA2 (Triosephosphate isomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tpiA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.006e-40
Identity = 100/222 (45.05%), Postives = 124/222 (55.86%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            RK  V GNWK N T  E  ++ S + +                F  L  V   +     H+AAQNC  +  GAFTGE+S  ML   G  +VI+GHSERR    ++N  V  KV  ALS GL VI CVGETL++RE G T +VV  Q K   + V+   +IV+AYEPVWAIGTGK A+  QAQEVH  +R  +    S   AA  RI YGGSV  +N +EL A
Sbjct:    2 RKKIVVGNWKMNKTIAEAVELSSAIIDQLGEVSASCEVGIAPAFPALSGVHGVISGTGIHLAAQNCHYEDDGAFTGEVSVRMLDEAGCSYVIVGHSERRQYFGDTNPVVNLKVKKALSAGLNVILCVGETLDEREKGITTEVVTCQVKEGLEGVADIGDIVIAYEPVWAIGTGKTASSLQAQEVHASIRATVAGLYSEPAAAGVRIQYGGSVKPSNAEELFA 223          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.006e-40
Identity = 101/223 (45.29%), Postives = 128/223 (57.40%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            R+  V GNWK N T  E  ++ + + E                F  L  V  ++      +AAQNC  +  GAFTGE+S  ML   G  +VILGHSERR +  E+NE V  KV  AL++GL+VI CVGETL++REAG T  +V AQ  + +AD VS  S +V+AYEPVWAIGTGK AT  QAQ+VH  +R  +        A   RI YGGSV  +N  EL A
Sbjct:    2 RRTIVVGNWKMNNTIAESIELATAIAEKVGATKPECEVGIAPTFPALHEVGKTIEWSGVQLAAQNCHYENDGAFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNEIVNRKVKKALAEGLRVILCVGETLDEREAGVTDKIVTAQVVEGLAD-VSDISTLVIAYEPVWAIGTGKTATKEQAQDVHASIRSTIEKLYGDSAARHLRIQYGGSVKPSNAAELFA 223          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.006e-40
Identity = 97/221 (43.89%), Postives = 125/221 (56.56%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKEL 687
            RK  V GNWK N T +E   +   LNE                F+ L  V   +      V A+NC  K  GA+TGE+SAEM+ + G  +VILGHSERR    E+   + +KV  AL+ GL  I C+GE LE+REA    +VVAAQ +++       +S I+LAYEPVWAIGTGK A+P QAQE+H  +R  +      EIA  T I+YGGS   +N KEL
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKASGAYTGEVSAEMVASTGAKYVILGHSERRAYYGETVAILEEKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQMESVFSLSAEDFSKIILAYEPVWAIGTGKTASPEQAQEIHAFIRSIVADKYGKEIADNTSILYGGSCKPSNAKEL 222          
The following BLAST results are available for this feature:
BLAST of CN185510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PLAF71.658e-4341.63Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_BACFR6.301e-4345.74Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN6.301e-4345.74Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_MAGSM1.552e-4144.20Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_PSEU52.647e-4144.00Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_PORGI3.457e-4142.79Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PORG33.457e-4142.79Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PROA21.006e-4045.05Triosephosphate isomerase OS=Prosthecochloris aest... [more]
TPIS_CHLP81.006e-4045.29Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]
TPIS_BACTN1.006e-4043.89Triosephosphate isomerase OS=Bacteroides thetaiota... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001H09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185510 ID=CN185510; Name=CN185510; organism=Citrus sinensis; type=EST; length=693bp
CACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTCTTCGTCGGCGG
TAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAAGATAGTGAGCG
TACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTT
AGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGA
TTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCA
CCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTATTCCTTGGGTC
ATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTT
TGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTG
CTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGAT
GTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTC
AAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGG
TTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGG
CTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTA
CGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCA
back to top