CN185510

Overview
NameCN185510
Unique NameCN185510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4526 contig Csv1_Contig4526:47..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.314e-40
Identity = 97/223 (43.50%), Postives = 126/223 (56.50%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            RK  V GNWK N   +E   +   LNE                F+ L  V   + +    V A+NC  K  GA+TGE+SAEM+ + G  +VILGHSERR   +E+ E + +KV  AL+  LK I C+GE LE+REA    +VVAAQ  ++       +S I+LAYEPVWAIGTGK AT  QAQE+H  +R  +      E+A  T I+YGGS   +N KEL A
Sbjct:    2 RKNIVAGNWKMNKNLQEGIALAKELNEALAADKPNCDVVICTPFIHLASVTPIVDKAVIGVGAENCADKVSGAYTGEVSAEMVASTGAEYVILGHSERRAYYHETVEILEEKVKLALANNLKPIFCIGEVLEEREANKQNEVVAAQLASVFSLSAEDFSKIILAYEPVWAIGTGKTATAEQAQEIHAFIRSLIADKYGKEVADNTSILYGGSCKPSNAKELFA 224          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.716e-40
Identity = 103/223 (46.19%), Postives = 122/223 (54.71%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKEL 687
            RK  V GNWK N T  E      ++ + L EG               +    L  S L     + AQNC  +  GAFTGE+SA M+   G   VI GHSERR    E+N  V  KV +ALS+GL+VI C GETLEQRE G T DVV AQ +     +   SNIV+AYEPVWAIGTGK AT  QA+EVH  +R  +      E A   RI YGGSV  +N KEL
Sbjct:    2 RKKIVVGNWKMNKTVTESLVLAAEVTAALGEGFTGCDVGIAPPFTALYEVGKLTGSRLA----LVAQNCHFEPDGAFTGEVSASMVREAGCSAVIAGHSERRHCFGETNAIVNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIRNTVSDLFGEEAAGRLRIQYGGSVKPSNAKEL 220          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.241e-40
Identity = 105/226 (46.46%), Postives = 132/226 (58.41%), Query Frame = 1
Query:   31 RKFFVGGNWKCN----GTPEEVKKIVSVL-NEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKEL 687
            RK FV GNWK N    G      +I+ +L +E                 +F  + +S+++    +AAQNC+ +  GA+TGEISA ML N G  +VILGHSERR   NE++E V  KV  ALS  L VI CVGETLEQRE+G T  VV  Q +  + D       ++V+AYEPVWAIGTGK ATP QAQEVH  +R  +      E+A   RI YGGSV  +N KEL
Sbjct:    2 RKKFVAGNWKMNKDLLGAVSLATEILQLLGDEAPTCEVAIAPTFLCQQAVFQVIDESAIK----LAAQNCFYEDQGAYTGEISAAMLRNSGCEYVILGHSERRQYFNETDEIVNKKVKNALSVELDVIMCVGETLEQRESGVTKSVVETQVRGGLKDLTAEDMKSVVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKEL 223          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.927e-40
Identity = 92/225 (40.89%), Postives = 135/225 (60.00%), Query Frame = 1
Query:   25 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            M R   V GNWK NG     K +++ + +                F +L   +S++     + +QN   ++ GAFTGE+SA ML  +G  +VI+GHSERR +  E++  +  K A+A + GL  I CVGETLE+R++G+T  +V  Q +A+ D   V++++N ++AYEPVWAIGTGK A+P QAQ VH  LR++L A   P+IA + R++YGGSV   N   L A
Sbjct:    1 MNRTPLVAGNWKMNGR----KDLLTEMADALAGYAGAAEVVICPPFPYLAAARSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQFL-AKDDPDIAQSLRLLYGGSVKADNAALLFA 220          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_PARD8 (Triosephosphate isomerase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=tpiA PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.516e-40
Identity = 97/224 (43.30%), Postives = 127/224 (56.70%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            RK  V GNWK N T  E   +   L+E                F  L  V +++  +   VAA+NC  K+ GA+TGE+SA M+ + G  +VILGHSERR   +E+ E +  KV  AL+ GL  I C+GE LE+REAG   +VV AQ       +S+  +  I+LAYEPVWAIGTGK A+  QA+E+H  +R  L A    E+A    I+YGGS N  N KEL A
Sbjct:    2 RKNIVAGNWKMNTTLAEGLALAKGLDEALKGKTPNCDVIIGTPFTHLASVAAAIDTNKIGVAAENCADKEKGAYTGEVSAAMVASTGAKYVILGHSERRAYYHETPEILKTKVELALANGLTPIFCIGEVLEEREAGKHFEVVDAQIAGSLFDLSAEDFGKIILAYEPVWAIGTGKTASAEQAEEIHAHIRATLAAKYGNEVADNCTILYGGSCNAGNAKELFA 225          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_CLOTH (Triosephosphate isomerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.453e-39
Identity = 97/223 (43.50%), Postives = 127/223 (56.95%), Query Frame = 1
Query:   25 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKEL 687
            M RK    GNWK N TP+E  + V  L +G+                  G+V+++   +  VAAQN   ++ GAFTGE+S  ML  LG+ +VI+GHSERR    E++E V  KV  A   GLK I CVGE+L QRE G T ++V  Q K     +S+      V+AYEP+WAIGTGK AT  QA+EV   +R+ +      ++A A RI YGGSVN AN  EL
Sbjct:    1 MSRKVIAAGNWKMNKTPKEAVEFVQAL-KGRVADADTEVVVGVPFVCLPGVVEAAKGSNIKVAAQNMHWEEKGAFTGEVSGPMLAELGVDYVIIGHSERRQYFGETDETVNKKVHAAFKYGLKPIICVGESLTQREQGVTAELVRYQVKIALLGLSAEQVKEAVIAYEPIWAIGTGKTATNEQAEEVCGIIRECIKELYGQDVAEAIRIQYGGSVNAANAAEL 222          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_METCA (Triosephosphate isomerase OS=Methylococcus capsulatus GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.226e-39
Identity = 98/224 (43.75%), Postives = 126/224 (56.25%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            R+  V GNWK NG    V ++++ +  G               F+++      L+     + AQN      GAFTGEISA ML   G    I+GHSERRL+  ESNE V  +   A+   LK I CVGETLEQRE G T+ V+ AQ   + +   V S  + V+AYEPVWA+GTG+ AT  QAQEVH+ +R  L A  +PE+A A +IIYGGSV   N  EL A
Sbjct:    2 RRPLVVGNWKMNGRSASVARLLNDILAG--IGDCKAEVGVCVPFVYIPQASEILKGTKVMLGAQNVADHNSGAFTGEISAGMLREFGCELAIVGHSERRLLYGESNELVASRYEQAIQGHLKPILCVGETLEQREQGRTLAVIGAQIDTVFEFAGVQSLEHAVIAYEPVWAVGTGRSATTGQAQEVHYHIRS-LIARWNPEVAQAVQIIYGGSVKPENSAELFA 222          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPG (Triosephosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.415e-39
Identity = 95/223 (42.60%), Postives = 133/223 (59.64%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVK-KGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKEL 687
            R+  V GNWK +GT   V ++   L+                  LF+  V   L   +  V AQN  V+ + GA TGE++ E LV  G   V++GHSERR ++ E++E +  K A A ++GLK + C+GETLE+REAG T++VV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  + E+AA  +++YGGSV  AN  EL
Sbjct:    2 RRPMVAGNWKMHGTRASVAELTEGLSN--LALPSGVEVAVFPPALFINQVIDGLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQVIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAEDA-EVAAKVQLLYGGSVKAANAAEL 221          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_PSEF5 (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.230e-38
Identity = 98/223 (43.95%), Postives = 130/223 (58.30%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKK-GGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKEL 687
            R+  V GNWK +GT   V ++++ L                   L++  V   L+     V AQN  V+   GA TGEI+   LV+ G   V++GHSERRLI+ E +  +  K A A + GLK + CVGETLEQREAG T++VV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  S E+A   R++YGGSV  AN  EL
Sbjct:    2 RRPMVAGNWKMHGTRASVAELINGLRH--LALPSGVDVAVFPPCLYINQVIDGLKGKSIQVGAQNSAVESMQGALTGEIAPSQLVDAGCSLVLVGHSERRLIMGERDATLNRKFAAAQACGLKPVLCVGETLEQREAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRAQLAAENS-EVARGVRLLYGGSVKAANAVEL 221          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCH (Triosephosphate isomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.606e-38
Identity = 98/222 (44.14%), Postives = 122/222 (54.95%), Query Frame = 1
Query:   31 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLV-KSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            RK  V GNWK N      +++ + L                  FL L    K        + AQNC  +  GA+TGE+SA ML   G   VI+GHSERR    E+N  V  +V  AL++GL VI CVGETL +RE+G T D+V+AQ +     VS  SN+V+AYEPVWAIGTGK AT AQA+EVH  +R  +        A A RI YGGSV  +N  EL A
Sbjct:    2 RKKIVVGNWKMNNGVAASEQLAADLLAALGSSFTGCDVGIAPTFLSLTTAGKVIAGSTIQLVAQNCHYENDGAYTGEVSAAMLKGAGCSSVIIGHSERRQFFGETNATVNLRVKKALAEGLDVILCVGETLAERESGVTGDIVSAQVREGLVGVSDISNVVIAYEPVWAIGTGKTATSAQAEEVHLMIRTLVTELYGEPAAQALRIQYGGSVKPSNAVELFA 223          
The following BLAST results are available for this feature:
BLAST of CN185510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BACV81.314e-4043.50Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]
TPIS_CHLPD1.716e-4046.19Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_CHLT32.241e-4046.46Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_ALCBS2.927e-4040.89Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_PARD88.516e-4043.30Triosephosphate isomerase OS=Parabacteroides dista... [more]
TPIS_CLOTH1.453e-3943.50Triosephosphate isomerase OS=Clostridium thermocel... [more]
TPIS_METCA4.226e-3943.75Triosephosphate isomerase OS=Methylococcus capsula... [more]
TPIS_PSEPG9.415e-3942.60Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PSEF51.230e-3843.95Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_CHLCH1.606e-3844.14Triosephosphate isomerase OS=Chlorobium chlorochro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185510 ID=CN185510; Name=CN185510; organism=Citrus sinensis; type=EST; length=693bp
CACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTCTTCGTCGGCGG
TAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAAGATAGTGAGCG
TACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTT
AGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGA
TTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCA
CCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTATTCCTTGGGTC
ATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTT
TGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTG
CTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGAT
GTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTC
AAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGG
TTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGG
CTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTA
CGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCA
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