CN185504

Overview
NameCN185504
Unique NameCN185504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5453 contig Csv1_Contig5453:57..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185504 vs. ExPASy Swiss-Prot
Match: WNK6_ORYSJ (Probable serine/threonine-protein kinase WNK6 OS=Oryza sativa subsp. japonica GN=WNK6 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.088e-17
Identity = 56/164 (34.15%), Postives = 87/164 (53.05%), Query Frame = 1 
Query:    4 GFVGKCLENVSKRLPAKELLLDPFLASDAG---------EPLLIPQ------VPSFQNLNPN-GAVMELVPKFAVDSDRRKSTDMTITGTMNPEDDTIFLKVQITDKDGQARNIYFPFDIFNDTATEVALEMVKELEITDWEPLEIAEMIEQEISSLVPNWKEC 447
            GF+  CL +VS RLPA ELL  PFL SD           EP+  P+       P F +L PN G V      F +   +   +D  + G M+  +  + L ++    DG+ +N+ FPFD+  DT+  V+ EMV++LE+ +W    +AE+I+  +  ++P+WK C
Sbjct:  269 GFIESCLASVSDRLPASELLKSPFLQSDDANHRSSNSVQEPVKFPENNFTKDEPIFVSLAPNNGTVNGKEQSFILVLQK---SDFLLEGNMSTTNP-VMLFLRFPGPDGKFKNVQFPFDMEKDTSLSVSTEMVEQLELPEWNNPVLAELIDAFLLHILPSWKPC 428
[Close]
BLAST of CN185504 vs. ExPASy Swiss-Prot
Match: WNK1_ARATH (Serine/threonine-protein kinase WNK1 OS=Arabidopsis thaliana GN=WNK1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.938e-16
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:  199 STDMTITGTMNPEDDTIFLKVQITDKDGQARNIYFPFDIFNDTATEVALEMVKELEITDWEPLEIAEMIEQEISSLVPNWKECGSPQF 462
            + D+TI G    +D  +FL+++I DK+G+ RNIYFPFDI  DTA  VA EMV EL++ D    +IA MI+ EISSLVP+W+    P+F
Sbjct:  388 NVDITIKGKRR-DDGGLFLRLRIADKEGRVRNIYFPFDIETDTALSVATEMVAELDMDDHGVTKIANMIDGEISSLVPSWRP--GPEF 472
The following BLAST results are available for this feature:
BLAST of CN185504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
WNK6_ORYSJ2.088e-1734.15Probable serine/threonine-protein kinase WNK6 OS=O... [more]
WNK1_ARATH3.938e-1651.14Serine/threonine-protein kinase WNK1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185504 ID=CN185504; Name=CN185504; organism=Citrus sinensis; type=EST; length=822bp
GAGGGTTTTGTGGGGAAATGTTTGGAGAATGTTTCAAAAAGGTTACCAGC
TAAAGAGCTCTTGCTCGACCCGTTTCTAGCTTCTGATGCAGGGGAGCCCT
TGCTTATCCCACAAGTCCCAAGTTTTCAAAATTTAAATCCTAATGGAGCA
GTGATGGAGCTAGTGCCAAAGTTTGCGGTTGATTCTGATCGAAGGAAGAG
TACTGATATGACCATAACAGGCACAATGAATCCTGAAGATGATACAATTT
TCCTGAAAGTACAGATTACAGACAAAGATGGTCAAGCTAGAAACATATAC
TTCCCCTTTGACATTTTCAATGATACTGCAACTGAAGTTGCCTTGGAGAT
GGTGAAAGAATTGGAGATTACTGATTGGGAACCACTTGAAATTGCTGAAA
TGATAGAGCAAGAAATATCTTCTTTGGTCCCGAATTGGAAGGAATGTGGC
TCTCCTCAATTCTGTCATCAACACAGCTTTAGCTATGAAGATGAAGATGA
TGACAATGACGACGATGGAATCTACCACCCTTTCTACTCTAACTCTTCCC
ATTCCTCGTCGCACGCTTCTCTCCCAGCTTTCTTCACAAACAATGCGAAT
TCTCCTCCCAGTTGGCTTCAACAAGAAGACTTGTTGGGCAATGATGATGC
GAGTTCCAATGGTTCTGTTAGTTCTTTCAAGTACTCAAGCTGGGATTACC
ACTCAGGCAATGAAGATGATTCTGAGTTCAGCCACAGAGCAGGAGAGCCA
CTCTGCATTGCAAGGGCAACTCAAAAATCTACAAGATTCTGCCCTGAAGC
TGCTATGAACAATGACCGCTGC
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