CN185501

Overview
NameCN185501
Unique NameCN185501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB3_ARATH (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Arabidopsis thaliana GN=SDH2-3 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 3.389e-64
Identity = 118/178 (66.29%), Postives = 138/178 (77.53%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTI-TPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPR 555
            IK+E D SL++RRS  EGICGSC+MNIDG N +ACL  I+P+ S  TI TPLPHM+VIKDLVVD+TN Y QYKS+EPWLK + PP   G+E  QS KDR KLDG+YECILCACC+TSCPSYWW  E + GPAALL A  WISDSRDEY +ERL+AI + E K+YRC  I NC   CP+
Sbjct:  106 IKAEDDASLSYRRSCREGICGSCSMNIDGTNTVACLKPINPNTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKTRKPPK-DGREHRQSPKDRKKLDGLYECILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDSRDEYREERLQAITESETKVYRCRAIKNCTATCPK 282          

HSP 2 Score: 23.0978 bits (48), Expect = 3.389e-64
Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQLQL 602
            PKGLNP   I+ +K   L
Sbjct:  281 PKGLNPASAILKMKSKHL 298          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_MYCGR (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Mycosphaerella graminicola GN=SDH2 PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.420e-64
Identity = 116/177 (65.54%), Postives = 136/177 (76.84%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E+DP+LTFRRS  EGICGSCAMNIDG N LACL +I    +  T I PLPH +V+KDLV DMT  Y QYKSI+P+L+R   PP  GKE  QS  DR KLDG+YECILCACCSTSCPSYWW SE YLGPA LL +  WI+DSRDE T +R +A+++   LYRCHTILNC+R CP+
Sbjct:  103 IKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTAKETRIYPLPHTYVVKDLVPDMTQFYKQYKSIKPYLQRDTAPP-DGKENRQSVADRKKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLLQSYRWINDSRDEKTAQRKDALNNSMSLYRCHTILNCSRTCPK 278          

HSP 2 Score: 21.9422 bits (45), Expect = 4.420e-64
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQ 593
            PKGLNP   I  IK+
Sbjct:  277 PKGLNPALAIAEIKK 291          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_UROFA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Uromyces fabae GN=SDH2 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 7.520e-64
Identity = 113/177 (63.84%), Postives = 133/177 (75.14%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E+DP+LTFRRS  EGICGSCAMNIDG N LACL +I+   SA   I PLPHM++IKDLV DMT+ Y QYKSIEP+LK  NPP     E  QS +DR KLDGMYECILCACCSTSCPSYWW  + YLGPA L+ A  W++DSRD Y ++R E + +   LYRCHTI NC + CP+
Sbjct:   91 IKNELDPTLTFRRSCREGICGSCAMNIDGVNTLACLKRINKETSAPVKIYPLPHMYIIKDLVPDMTHFYKQYKSIEPFLKNDNPPAQG--EFLQSPEDRKKLDGMYECILCACCSTSCPSYWWNQDEYLGPAVLMQAYRWMADSRDSYGEDRKEKLQNTLSLYRCHTIFNCTKTCPK 265          

HSP 2 Score: 24.6386 bits (52), Expect = 7.520e-64
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQ 593
            PKGLNP K I +IK+
Sbjct:  264 PKGLNPAKAISHIKR 278          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_SCHPO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Schizosaccharomyces pombe GN=sdh2 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 7.529e-64
Identity = 111/176 (63.07%), Postives = 131/176 (74.43%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E DP+LTFRRS  EGICGSCAMNI+G N LAC+  I      + I PLPH F++KDLV D+T  Y QYKSIEPWL+  N P    KE  QS+ DRAKLDG+YECILCACCSTSCPSYWW SE YLGPA L+ A  WI DSRD+ T +RL+ + +   +YRCHTI+NCAR CP+
Sbjct:   61 IKNEQDPTLTFRRSCREGICGSCAMNINGSNTLACICNIKKDNKPTKIYPLPHCFIVKDLVPDLTYFYKQYKSIEPWLQNDNIPK--DKEFYQSRADRAKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQAYRWIIDSRDQATAKRLDVMQNSMSVYRCHTIMNCARTCPK 234          

HSP 2 Score: 24.6386 bits (52), Expect = 7.529e-64
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQL 596
            PKGLNPG  I  +K L
Sbjct:  233 PKGLNPGLAIAKVKAL 248          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_RAT (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Rattus norvegicus GN=Sdhb PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 9.805e-64
Identity = 111/177 (62.71%), Postives = 134/177 (75.71%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPS-GSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+EID +LTFRRS  EGICGSCAMNI+G N LAC  +I    G  S I PLPHM+VIKDLV D++N Y QYKSIEP+LK+K+      ++  QS +DR KLDG+YECILCACCSTSCPSYWW  + YLGPA L+ A  W+ DSRDE+T+ERL  + D F LYRCHTI+NC + CP+
Sbjct:   81 IKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTDLGKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDEFTEERLAKLQDPFSLYRCHTIMNCTQTCPK 257          

HSP 2 Score: 27.7202 bits (60), Expect = 9.805e-64
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQL 596
            PKGLNPGK I  IK++
Sbjct:  256 PKGLNPGKAIAEIKKM 271          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_DROME (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Drosophila melanogaster GN=SdhB PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 1.278e-63
Identity = 112/179 (62.57%), Postives = 137/179 (76.54%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPP-PMPGK-EIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E+DP+LTFRRS  EGICGSCAMNI G N LAC++KI  + S S  + PLPHM+V++DLV DM N Y QY++I+PWL+RKN      GK +  QS +DR+KLDG+YECILCACCSTSCPSYWW +E YLGPA L+ A  WI DSRDE + ERL  + D F +YRCHTI+NC R CP+
Sbjct:   86 IKNEMDPTLTFRRSCREGICGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDMNNFYEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCACCSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLNKLKDPFSVYRCHTIMNCTRTCPK 264          

HSP 2 Score: 27.335 bits (59), Expect = 1.278e-63
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQL 596
            PKGLNPG+ I  IK+L
Sbjct:  263 PKGLNPGRAIAEIKKL 278          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_RICFE (Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia felis GN=sdhB PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.823e-63
Identity = 111/176 (63.07%), Postives = 132/176 (75.00%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+EID +LTFRRS  EGICGSC+MNIDG N LAC+  I        I PLPHM V+KDLV DM++ Y QY+SIEPWLK  +P P   + + QS K R KLDG+YECILCACCSTSCPSYWW  + YLGPA LL A  WI+DSRD++T ERLE ++D  KLYRCHTI+NC + CP+
Sbjct:   66 IKNEIDSTLTFRRSCREGICGSCSMNIDGTNTLACIKPIEEISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKTDSPTPSNSERL-QSIKGREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDHTGERLEDLEDPSKLYRCHTIMNCTKTCPK 240          

HSP 2 Score: 25.409 bits (54), Expect = 4.823e-63
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQLQLKR 608
            PKGLNP K I  IK L  +R
Sbjct:  239 PKGLNPAKAIGKIKSLIAER 258          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_HUMAN (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Homo sapiens GN=SDHB PE=1 SV=3)

HSP 1 Score: 234.187 bits (596), Expect = 1.069e-62
Identity = 108/177 (61.02%), Postives = 134/177 (75.71%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPS-GSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E+D +LTFRRS  EGICGSCAMNI+G N LAC  +I  +    S I PLPHM+VIKDLV D++N Y QYKSIEP+LK+K+      ++  QS ++R KLDG+YECILCACCSTSCPSYWW  + YLGPA L+ A  W+ DSRD++T+ERL  + D F LYRCHTI+NC R CP+
Sbjct:   79 IKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPK 255          

HSP 2 Score: 27.7202 bits (60), Expect = 1.069e-62
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQL 596
            PKGLNPGK I  IK++
Sbjct:  254 PKGLNPGKAIAEIKKM 269          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_BOVIN (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Bos taurus GN=SDHB PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.069e-62
Identity = 110/177 (62.15%), Postives = 135/177 (76.27%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGS-ASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+EID +LTFRRS  EGICGSCAMNI+G N LAC  +I  + S  S I PLPHM+VIKDLV D++N Y QYKSIEP+LK+K+      ++  QS +DR KLDG+YECILCACCSTSCPSYWW  + YLGPA L+ A  W+ DSRD++T+ERL  + D F LYRCHTI+NC + CP+
Sbjct:   79 IKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLSKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQGGKEQYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTQTCPK 255          

HSP 2 Score: 27.7202 bits (60), Expect = 1.069e-62
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQL 596
            PKGLNPGK I  IK++
Sbjct:  254 PKGLNPGKAIAEIKKM 269          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_RECAM (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit OS=Reclinomonas americana GN=SDH2 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.463e-62
Identity = 111/176 (63.07%), Postives = 131/176 (74.43%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E D +LTFRRS  EG+CGSCAMNIDG N LAC+  I  +     I PLPHM +IKDLV D++N Y QYKSIEPW+K         KE  QS+ DR KLDG+YEC+LCACCSTSCPSYWW S+ YLGPA LL A  WI DSRD+ T+ERL+ ++D FKLYRCHTILNC + CP+
Sbjct:   47 IKNEQDSTLTFRRSCREGVCGSCAMNIDGTNTLACIKSIDTNKKEMKIYPLPHMHIIKDLVPDLSNFYAQYKSIEPWMKTTEKKL--DKEFYQSRNDREKLDGLYECVLCACCSTSCPSYWWNSDKYLGPAVLLQAYRWIVDSRDQGTRERLQYLEDPFKLYRCHTILNCTKTCPK 220          
The following BLAST results are available for this feature:
BLAST of CN185501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
DHSB3_ARATH3.389e-6466.29Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_MYCGR4.420e-6465.54Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_UROFA7.520e-6463.84Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_SCHPO7.529e-6463.07Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_RAT9.805e-6462.71Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_DROME1.278e-6362.57Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_RICFE4.823e-6363.07Succinate dehydrogenase iron-sulfur subunit OS=Ric... [more]
DHSB_HUMAN1.069e-6261.02Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_BOVIN1.069e-6262.15Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_RECAM1.463e-6263.07Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185501 ID=CN185501; Name=CN185501; organism=Citrus sinensis; type=EST; length=768bp
GGGGGCTGGCGGGGCCCCCTCTGATAGATCAAGAGCGAGATCGATCCTTC
CTTGACCTTCCGCCGATCCCGTTGCGAGGGGATTTGCGGCTCGTGCGCGA
TGAACATCGACGGCTGTAACGGACTCGCGTGTCTGACGAAGATTTCGCCG
TCGGGATCAGCATCGACGATAACGCCGTTACCGCACATGTTCGTGATAAA
GGACTTGGTGGTGGATATGACTAATGTTTACAACCAGTACAAAAGTATAG
AGCCGTGGCTGAAGAGGAAGAACCCGCCGCCCATGCCGGGGAAGGAGATT
CCGCAGAGTAAGAAGGACAGGGCCAAGCTGGATGGGATGTACGAGTGTAT
TCTGTGCGCCTGCTGTAGCACATCTTGCCCCAGTTATTGGTGGACCTCTG
AAGCCTATTTGGGCCCCGCTGCTTTGCTTCATGCTGGGGGGTGGATAAGT
GATAGCCGTGATGAATATACCAAGGAACGTCTGGAAGCAATAGATGATGA
GTTTAAGCTGTATCGCTGCCATACCATATTGAACTGTGCCCGTGCCTGCC
CAAGGGCTTGAACCCTGGAAAGCAGATAATAAATATCAAGCAACTTCAGC
TAAAACGGTGATCATGCCTAAGAGTCAAGTTTTGTGAATCAAGATGGTGT
GGATTTGGCCAGTTAGTTACCTGCCAACTATATGGTTTGAGTTAATAATT
TGCACATTGCTTGGATTATTCATCCCATTTGTACTTAGATTGGGATCAAA
TTTGAAGGCTTCTTGTTC
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