CN185501

Overview
NameCN185501
Unique NameCN185501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: FRDB_ECOLI (Fumarate reductase iron-sulfur subunit OS=Escherichia coli (strain K12) GN=frdB PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.212e-18
Identity = 54/176 (30.68%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK  + P L++R S    ICGSC M ++    LAC T +        +  L +  + +DLVVDMT+     ++I+P++   +     G  I Q+    AK      CI C  C  +CP +    E ++GPAA+  A  +  DSRD   KER+  ++ +  ++ C  +  C+  CP+
Sbjct:   44 IKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNI-QTPAQMAKYHQFSGCINCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPK 217          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: FRDB_ECOL6 (Fumarate reductase iron-sulfur subunit OS=Escherichia coli O6 GN=frdB PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.212e-18
Identity = 54/176 (30.68%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK  + P L++R S    ICGSC M ++    LAC T +        +  L +  + +DLVVDMT+     ++I+P++   +     G  I Q+    AK      CI C  C  +CP +    E ++GPAA+  A  +  DSRD   KER+  ++ +  ++ C  +  C+  CP+
Sbjct:   44 IKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNI-QTPAQMAKYHQFSGCINCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPK 217          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: FRDB_ECO57 (Fumarate reductase iron-sulfur subunit OS=Escherichia coli O157:H7 GN=frdB PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.212e-18
Identity = 54/176 (30.68%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK  + P L++R S    ICGSC M ++    LAC T +        +  L +  + +DLVVDMT+     ++I+P++   +     G  I Q+    AK      CI C  C  +CP +    E ++GPAA+  A  +  DSRD   KER+  ++ +  ++ C  +  C+  CP+
Sbjct:   44 IKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNI-QTPAQMAKYHQFSGCINCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPK 217          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: FRDB_WOLSU (Fumarate reductase iron-sulfur subunit OS=Wolinella succinogenes GN=frdB PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.613e-16
Identity = 65/190 (34.21%), Postives = 93/190 (48.95%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLAC--LTKISPSGSASTITPLPHMFVIKDLVVDMTNVYN-QYKSIEPWL---KRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKE-RLEAIDDEFKLYRCHTILNCARACPRA*TLESR 576
            I+   DP L F      GICGSC M I+G   LAC  LTK    G   T+ PLP   +IKDL VD  N +N   + +E W+   K  +   +  +  P+  ++  +LD    CI C CC  +C +     E ++G A L     ++ D  DE T E   E I D+  ++ C T+L C   CP+   L+S+
Sbjct:   43 IRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLTKDFEDG-VITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELD---RCIECGCCIAACGTK-IMREDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSK 227          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: FRDB_HELPJ (Fumarate reductase iron-sulfur subunit OS=Helicobacter pylori J99 GN=frdB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.100e-15
Identity = 58/188 (30.85%), Postives = 92/188 (48.94%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISP-SGSASTITPLPHMFVIKDLVVDMTNVYNQY-KSIEPWLKRKNPPPM--PGKEI-PQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERL-EAIDDEFKLYRCHTILNCARACPRA*TLES 573
            I+   DP L+F      GICGSCAM ++G   LAC T  S       T+ P+P   +IKDL V+  + ++   K +E W   K    +  P K + P   ++  +LD    CI C CC  SC +       ++G A +  A  ++ DS DE + +   E + D+  ++ C +++ C   CP+   L+S
Sbjct:   46 IREHQDPDLSFDFVCRAGICGSCAMMVNGRPRLACKTLTSSFENGVITLMPMPSFTLIKDLSVNTGDWFSDMTKRVESWAHSKEEVDITKPEKRVEPDEAQEVFELD---RCIECGCCIASCGTKLMRPN-FIGAAGMNRAMRFMIDSHDERSDDDFYELVGDDDGVFGCMSLIACHDTCPKELPLQS 229          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: FRDB_HELPY (Fumarate reductase iron-sulfur subunit OS=Helicobacter pylori GN=frdB PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.699e-15
Identity = 58/188 (30.85%), Postives = 91/188 (48.40%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISP-SGSASTITPLPHMFVIKDLVVDMTNVY-NQYKSIEPWLKRKNPPPM--PGKEI-PQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERL-EAIDDEFKLYRCHTILNCARACPRA*TLES 573
            I+   DP L+F      GICGSCAM ++G   LAC T  S       T+ P+P   +IKDL V+  + + +  K +E W   K    +  P K + P   ++  +LD    CI C CC  SC +       ++G A +  A  ++ DS DE   +   E + D+  ++ C +++ C   CP+   L+S
Sbjct:   46 IREHQDPDLSFDFVCRAGICGSCAMMVNGRPRLACKTLTSSFESGVITLMPMPSFTLIKDLSVNTGDWFLDMTKRVESWAHSKEEVDITRPEKRVEPDEAQEVFELD---RCIECGCCIASCGTKLMRPN-FIGAAGMNRAMRFMIDSHDERNDDDFYELVGDDDGVFGCMSLIACHDTCPKELPLQS 229          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: Y1067_METMP (Uncharacterized iron-sulfur protein MMP1067 OS=Methanococcus maripaludis GN=MMP1067 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.136e-14
Identity = 57/175 (32.57%), Postives = 86/175 (49.14%), Query Frame = 1
Query:   49 SLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEI------PQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            ++ FR S   G CGSCA+ I+  + LAC TK+  +     I PL    VI DLVVD    Y +  ++  ++++KN   +  KE+      P   KD  K+ G   CI C  C   CP+  +++  Y GP  +     +  D +DE  +E+ EA D+   +Y C T   C   CP+
Sbjct:   39 NIQFRSSCKAGQCGSCAVMINKKSKLACKTKVEDN---MIIEPLEGFDVISDLVVDREPYYKKIGTLRNYIQKKN-EKISEKELDGLKLYPDDLKDVKKIRG---CIDCLSCIAMCPARKYSN--YPGPTLMRQLARFAFDPKDEIDREK-EAFDE--NIYNCTTCGRCVEVCPK 201          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: Y092_METJA (Uncharacterized iron-sulfur protein MJ0092 OS=Methanocaldococcus jannaschii GN=MJ0092 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.484e-14
Identity = 56/176 (31.82%), Postives = 80/176 (45.45%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            I    + ++ FR S     CGSCA+ I+G   LAC TK+        I PL    VI+DL+VD    Y +   I+ +L RKN P      IP+  ++  +L G   CI C  C + CP+       Y GP  +     +  D RDE  +E     ++   +Y C T   C   CP+
Sbjct:   34 INKHYEANILFRASCRNAQCGSCAVTINGEPRLACETKVE---DGMIIEPLRGFKVIRDLIVDREPYYKKLLGIKNYLIRKNYPEELEILIPKYVEENKELRG---CIDCLSCLSVCPAR--EVSDYPGPTFMRQLARFAFDKRDEDGREITAYFEN---IYNCTTCAKCVEVCPK 198          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_BACSU (Succinate dehydrogenase iron-sulfur subunit OS=Bacillus subtilis GN=sdhB PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.655e-13
Identity = 47/178 (26.40%), Postives = 87/178 (48.88%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPM-PGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTK-ERLEAIDDEFKLYRCHTILNCARACPR 555
            +K E    +T+  +  E +CG+C+M I+G    +C   I        + P+    V++DL VD + +++  K ++ W+       + PG  +P+ ++  A    + +C+ C  C  +CP+    S+ ++GPA +     + +       K ERLEA+ DE  L  C    NC ++CP+
Sbjct:   50 VKGEKTTPVTWDMNCLEEVCGACSMVINGKPRQSCTALIDQLEQPIRLKPMKTFPVVRDLQVDRSRMFDSLKKVKAWIPIDGTYDLGPGPRMPEKRRQWAY--ELSKCMTCGVCLEACPNVNSKSK-FMGPAPMSQVRLFNAHPTGAMNKSERLEALMDEGGLADCGNSQNCVQSCPK 224          
The following BLAST results are available for this feature:
BLAST of CN185501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
FRDB_ECOLI2.212e-1830.68Fumarate reductase iron-sulfur subunit OS=Escheric... [more]
FRDB_ECOL62.212e-1830.68Fumarate reductase iron-sulfur subunit OS=Escheric... [more]
FRDB_ECO572.212e-1830.68Fumarate reductase iron-sulfur subunit OS=Escheric... [more]
FRDB_WOLSU4.613e-1634.21Fumarate reductase iron-sulfur subunit OS=Wolinell... [more]
FRDB_HELPJ5.100e-1530.85Fumarate reductase iron-sulfur subunit OS=Helicoba... [more]
FRDB_HELPY8.699e-1530.85Fumarate reductase iron-sulfur subunit OS=Helicoba... [more]
Y1067_METMP1.136e-1432.57Uncharacterized iron-sulfur protein MMP1067 OS=Met... [more]
Y092_METJA1.484e-1431.82Uncharacterized iron-sulfur protein MJ0092 OS=Meth... [more]
DHSB_BACSU3.655e-1326.40Succinate dehydrogenase iron-sulfur subunit OS=Bac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185501 ID=CN185501; Name=CN185501; organism=Citrus sinensis; type=EST; length=768bp
GGGGGCTGGCGGGGCCCCCTCTGATAGATCAAGAGCGAGATCGATCCTTC
CTTGACCTTCCGCCGATCCCGTTGCGAGGGGATTTGCGGCTCGTGCGCGA
TGAACATCGACGGCTGTAACGGACTCGCGTGTCTGACGAAGATTTCGCCG
TCGGGATCAGCATCGACGATAACGCCGTTACCGCACATGTTCGTGATAAA
GGACTTGGTGGTGGATATGACTAATGTTTACAACCAGTACAAAAGTATAG
AGCCGTGGCTGAAGAGGAAGAACCCGCCGCCCATGCCGGGGAAGGAGATT
CCGCAGAGTAAGAAGGACAGGGCCAAGCTGGATGGGATGTACGAGTGTAT
TCTGTGCGCCTGCTGTAGCACATCTTGCCCCAGTTATTGGTGGACCTCTG
AAGCCTATTTGGGCCCCGCTGCTTTGCTTCATGCTGGGGGGTGGATAAGT
GATAGCCGTGATGAATATACCAAGGAACGTCTGGAAGCAATAGATGATGA
GTTTAAGCTGTATCGCTGCCATACCATATTGAACTGTGCCCGTGCCTGCC
CAAGGGCTTGAACCCTGGAAAGCAGATAATAAATATCAAGCAACTTCAGC
TAAAACGGTGATCATGCCTAAGAGTCAAGTTTTGTGAATCAAGATGGTGT
GGATTTGGCCAGTTAGTTACCTGCCAACTATATGGTTTGAGTTAATAATT
TGCACATTGCTTGGATTATTCATCCCATTTGTACTTAGATTGGGATCAAA
TTTGAAGGCTTCTTGTTC
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