CN185500

Overview
NameCN185500
Unique NameCN185500
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185500_ssr129 microsatellite CN185500_ssr129:129..140. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1158 contig Csv1_Contig1158:5..619. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: ILVE_HELPY (Branched-chain-amino-acid aminotransferase OS=Helicobacter pylori GN=ilvE PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.440e-20
Identity = 51/125 (40.80%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  239 DLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKG-TLYIRP 610
            +LDW NLGFS    D+ + +   K+ ++ QG L     ++LS  + VL+YGQ  +EG KAYR++ G+ LLFRP  NA R++   ER+ MP  S + F+ A  ++  AN++W+ P   G +LY+RP
Sbjct:    6 NLDWKNLGFSYIKTDFRF-IATYKNGSWSQGGLVSENMLQLSEGSPVLHYGQACFEGLKAYRSQKGKALLFRPLENAKRLQTSCERLLMPKVSEELFLRACAEVVKANQKWLAPYKSGASLYLRP 129          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: ILVE_STRCO (Probable branched-chain-amino-acid aminotransferase OS=Streptomyces coelicolor GN=ilvE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.707e-19
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 2
Query:  206 KPSV--FSDDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPP-PGKGTLYIRP 610
            KPS    SD E A +   N GF     D+M T+K ++   +  GQL  YA + L P+  VL+Y Q ++EG KAYR  DG +  FRP+ N +R +  + R+ MP   VD F++A   +   +++WVP   G+ +LY+RP
Sbjct:    9 KPSAHPLSDSERAAI-LANPGFGRHFTDHMVTIKWTEGRGWHDGQLVPYAPLSLDPATMVLHYAQEIFEGLKAYRRPDGSVATFRPEKNGARFQASSRRLGMPELPVDTFIEACDALVAQDEKWVPAHGGEESLYLRP 145          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCAT_DICDI (Branched-chain-amino-acid aminotransferase OS=Dictyostelium discoideum GN=bcaA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.368e-18
Identity = 45/123 (36.59%), Postives = 78/123 (63.41%), Query Frame = 2
Query:  245 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKG-TLYIRP 610
            D   L F  + +D+M  ++ +K E +   ++S Y N+ + PSA+VL+Y    +EG KAY+  +G+I LFRPD N +R    A+R+C+P  + +  ++ +K++ + +K W+ P GKG +LY+RP
Sbjct:   35 DKTKLVFGKQFSDHMIEVQWTKEEGWGVPKISGYHNLSIPPSASVLHYALECFEGMKAYKDSNGKIRLFRPDQNMNRFLNSAKRICLPEFNKEAVIELIKKLCVLDKDWI-PEGKGYSLYLRP 156          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCAT_NEMVE (Branched-chain-amino-acid aminotransferase OS=Nematostella vectensis GN=v1g246094 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.598e-17
Identity = 43/122 (35.25%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  245 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            D + L F  +  D+   +K S  + +   Q+  Y N+ L P+A+ L+YG   +EG KAYR +DG+I +FRP +N  RM   A R C+P+ +  + V+ ++++    + WVP     +LYIRP
Sbjct:   61 DPNTLVFGKEFTDHALILKWSDEDGWDNPQIIPYGNLSLPPAASALHYGLECFEGMKAYRGDDGKIRMFRPLMNMKRMNNSAARACLPTFNSGEMVECIRKLIHLEREWVPHSNTCSLYIRP 182          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: ILVE2_BACSU (Branched-chain-amino-acid aminotransferase 2 OS=Bacillus subtilis GN=ilvK PE=1 SV=5)

HSP 1 Score: 88.9669 bits (219), Expect = 2.087e-17
Identity = 42/122 (34.43%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  245 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            D + L F     D+M+ M  +  + +   ++  Y  + + P+A V +YGQ V+EG KAY +ED  +LLFRP+ N  R+    +R+C+P    +Q ++ +KQ+   +K W+P     +LYIRP
Sbjct:   19 DPNQLSFGRVFTDHMFVMDYAADKGWYDPRIIPYQPLSMDPAAMVYHYGQTVFEGLKAYVSEDDHVLLFRPEKNMERLNQSNDRLCIPQIDEEQVLEGLKQLVAIDKDWIPNAEGTSLYIRP 140          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: ILVE_MYCTU (Probable branched-chain-amino-acid aminotransferase OS=Mycobacterium tuberculosis GN=ilvE PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.560e-17
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 2
Query:  260 GFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVP-PPGKGTLYIRP 610
            GF     D+M ++  ++   +   ++  Y  IEL PSA VL+Y Q V+EG KAYR  DG I+ FR D NA+R++  A R+ +P      F+++++Q+   +K WVP   G+  LY+RP
Sbjct:   30 GFGKYHTDHMVSIDYAEGRGWHNARVIPYGPIELDPSAIVLHYAQEVFEGLKAYRWADGSIVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRP 147          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: ILVE_MYCLE (Probable branched-chain-amino-acid aminotransferase OS=Mycobacterium leprae GN=ilvE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 45/118 (38.14%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  260 GFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVP-PPGKGTLYIRP 610
            GF     D+M ++       +   ++  Y  I+L PSA VL+Y Q V+EG KAYR  DG I+ FRPD NA+R++  A R+ +P    + F+D++ Q+   +  WVP   G+  LY+RP
Sbjct:   30 GFGKYHTDHMVSIDYIDGRGWHDARVIPYGPIQLDPSAIVLHYAQEVFEGLKAYRWADGSIVSFRPDANAARLRSSARRIAIPELPDELFIDSLCQLIAVDNAWVPRVGGEEALYLRP 147          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: ILVE_STAEQ (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ilvE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.936e-16
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  245 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            D  NLGF     DYM ++     + +   ++  YA  E+SP+A  L+YGQ V+EG KAY+  +G ++LFRPD N  R+     R+ MP    +  ++ +KQ+    + WVP     +LYIRP
Sbjct:   18 DTANLGFGQYFTDYMLSVDYDADQGWHDMKIVPYAPFEISPAAQGLHYGQAVFEGLKAYK-HNGEVVLFRPDQNFKRINNSLARLEMPEVDEEALLEGLKQLVDVERDWVPEGEGQSLYIRP 138          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: ILVE_STAES (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ilvE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.140e-16
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  245 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            D  NLGF     DYM ++     + +   ++  YA  E+SP+A  L+YGQ V+EG KAY+  +G ++LFRPD N  R+     R+ MP    +  ++ +KQ+    + WVP     +LYIRP
Sbjct:   18 DTANLGFGQYFTDYMLSVDYDADQGWHDMKIVPYAPFEISPAAQGLHYGQAVFEGLKAYK-HNGEVVLFRPDQNFKRINNSLARLEMPEVDEEALLEGLKQLIDVERDWVPEGEGQSLYIRP 138          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCAT_MONBE (Branched-chain-amino-acid aminotransferase OS=Monosiga brevicollis GN=37018 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.768e-16
Identity = 39/111 (35.14%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  278 ADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            +D+M   K   +E +    +S YAN+ L+PS+ VL+Y    +EG KA+R +D RI LFRP+LN  R+   + R+ +P    D+ +  + ++ + +K W+P     +LY+RP
Sbjct:   58 SDHMLKCKWDVNEGWAAPTISPYANLSLAPSSIVLHYAIECFEGMKAFRGDDDRIRLFRPNLNMDRLHRSSVRLALPDFDQDELLKCITELVIKDKDWIPAGRGYSLYLRP 168          
The following BLAST results are available for this feature:
BLAST of CN185500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ILVE_HELPY3.440e-2040.80Branched-chain-amino-acid aminotransferase OS=Heli... [more]
ILVE_STRCO1.707e-1938.41Probable branched-chain-amino-acid aminotransferas... [more]
BCAT_DICDI9.368e-1836.59Branched-chain-amino-acid aminotransferase OS=Dict... [more]
BCAT_NEMVE1.598e-1735.25Branched-chain-amino-acid aminotransferase OS=Nema... [more]
ILVE2_BACSU2.087e-1734.43Branched-chain-amino-acid aminotransferase 2 OS=Ba... [more]
ILVE_MYCTU3.560e-1738.14Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_MYCLE1.036e-1638.14Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_STAEQ3.936e-1636.89Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_STAES5.140e-1636.89Probable branched-chain-amino-acid aminotransferas... [more]
BCAT_MONBE8.768e-1635.14Branched-chain-amino-acid aminotransferase OS=Mono... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185500 ID=CN185500; Name=CN185500; organism=Citrus sinensis; type=EST; length=615bp
GAGGCTCTCTTCTCGGTTATTAACTCTGCCAAAAGGCGTGAACACCGTTG
CAAATAGCAACACAAGAATCATGATTCTAAAGGATGGTGCTGCATGCCTC
CGCAATTTGATCCACTTATTTCGACCTGCTTCTTCTTCTTTGACGTCCAA
GCTTGGAGCTTGCTATTTCTGTACATCTCATGTTGCCTCTCTGCAACAAC
CGGGCAAACCCTCTGTTTTCAGTGATGATGAGTATGCTGATTTGGACTGG
GATAATCTTGGATTTAGTATCAAGCCAGCTGATTATATGTACACCATGAA
ATGTTCTAAACACGAAAATTTCAAACAAGGACAGCTTAGTCGGTACGCAA
ACATTGAGCTAAGCCCTTCAGCAGCAGTCTTAAATTATGGACAGGGAGTG
TACGAAGGAACAAAAGCATACAGGACAGAAGATGGGCGTATTCTTCTCTT
CCGGCCAGATCTAAATGCTTCCCGTATGAAGATAGGTGCCGAGAGGATGT
GCATGCCGTCACCCTCCGTTGATCAGTTTGTCGACGCTGTGAAACAAATA
GCTCTTGCTAACAAGCGTTGGGTTCCTCCTCCAGGAAAAGGCACACTGTA
CATCAGGCCATTGCT
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