CN185500

Overview
NameCN185500
Unique NameCN185500
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185500_ssr129 microsatellite CN185500_ssr129:129..140. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1158 contig Csv1_Contig1158:5..619. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCAT1_MOUSE (Branched-chain-amino-acid aminotransferase, cytosolic OS=Mus musculus GN=Bcat1 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.768e-16
Identity = 42/122 (34.43%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  245 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            D D+L F     D+M T++ S    +++  +  + N+ + P+A+VL+Y   ++EG KA+R  D +I LFRPDLN  RM   A R  +P    ++ +  + Q+   ++ WVP     +LYIRP
Sbjct:   43 DPDSLVFGATFTDHMLTVEWSSASGWEKPHIKPFGNLPIHPAASVLHYAVELFEGLKAFRGVDNKIRLFRPDLNMDRMCRSAVRTTLPMFDKEELLKCILQLLQIDQEWVPYSTSASLYIRP 164          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCA2_YEAST (Branched-chain-amino-acid aminotransferase, cytosolic OS=Saccharomyces cerevisiae GN=BAT2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.768e-16
Identity = 42/111 (37.84%), Postives = 68/111 (61.26%), Query Frame = 2
Query:  281 DYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKG-TLYIRP 610
            D+M T + +  + +   ++  Y N+ L PSA V +Y   ++EG KAYRT D +I +FRPD+N  RM   A+R+C+P+   ++ +  + ++   +K  V P GKG +LYIRP
Sbjct:   36 DHMLTAEWTAEKGWGTPEIKPYQNLSLDPSAVVFHYAFELFEGMKAYRTVDNKITMFRPDMNMKRMNKSAQRICLPTFDPEELITLIGKLIQQDKCLV-PEGKGYSLYIRP 145          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: ILVE_STAAR (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain MRSA252) GN=ilvE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.496e-15
Identity = 44/122 (36.07%), Postives = 67/122 (54.92%), Query Frame = 2
Query:  245 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            D   LGF     DYM +      + +   ++  Y  IE+SP+A  ++YGQ V+EG KAY+ +DG + LFRPD N  R+     R+ MP  +  + ++ +KQ+    + WVP     +LYIRP
Sbjct:   18 DTSQLGFGKYFTDYMLSYDYDADKGWHDLKIVPYGPIEISPAAQGVHYGQSVFEGLKAYK-KDGEVALFRPDENFKRLNNSLARLEMPQVNEGELLEGLKQLVDLEREWVPEGEGQSLYIRP 138          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCA1_YEAST (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=BAT1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.694e-15
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  251 DNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            + L F     D+M T+  S  E +    +  Y N+ L PSA V +Y   ++EG KAYRT    I +FRPD N +RM   A R+C+P+   ++ +    ++   +K  VP     +LYIRP
Sbjct:   43 EELVFGQTFTDHMLTIPWSAKEGWGTPHIKPYGNLSLDPSACVFHYAFELFEGLKAYRTPQNTITMFRPDKNMARMNKSAARICLPTFESEELIKLTGKLIEQDKHLVPQGNGYSLYIRP 162          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCAT1_RAT (Branched-chain-amino-acid aminotransferase, cytosolic OS=Rattus norvegicus GN=Bcat1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.821e-14
Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = 2
Query:  245 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            D  +L F     D+M  ++ +    + +  +  + N+ + P+A+VL+Y   ++EG KA+R  D +I LFRPDLN  RM   A R  +P    ++ +  V Q+   ++ WVP     +LYIRP
Sbjct:   68 DPSSLVFGASFTDHMLMVEWTSKYGWDKPHIKPFENLSIHPAASVLHYAVELFEGLKAFRGVDNKIRLFRPDLNMKRMCRSAVRTTLPEFDKEELLQCVLQLIQLDREWVPYSTSASLYIRP 189          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCAT1_HUMAN (Branched-chain-amino-acid aminotransferase, cytosolic OS=Homo sapiens GN=BCAT1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 39/122 (31.97%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  245 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            D +NL F     D+M T++ S    +++  +    N+ L P ++ L+Y   ++EG KA+R  D +I LF+P+LN  RM   A R  +P    ++ ++ ++Q+   ++ WVP     +LYIRP
Sbjct:   43 DPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRP 164          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCAT_CAEEL (Branched-chain-amino-acid aminotransferase, cytosolic OS=Caenorhabditis elegans GN=bcat-1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.811e-14
Identity = 39/123 (31.71%), Postives = 65/123 (52.85%), Query Frame = 2
Query:  242 LDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            LD   L F    ADYM T        +   ++     +++ P A VL+Y   ++EG KAYR  D +I +FRP++N +RMK  A R  +P    ++ ++ + ++   ++ WVP     +LY+RP
Sbjct:   65 LDPTKLKFGHTYADYMMTCDWDAERGWHHPKIEPIGELKIHPGAKVLHYASELFEGMKAYRGIDNKIRMFRPEMNMARMKRTALRAALPDFDSEEMINVLTELLRLDQEWVPNSDVCSLYLRP 187          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: ILVE_STAAW (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain MW2) GN=ilvE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.284e-14
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  257 LGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            LGF     DYM +      + +   ++  Y  IE+SP+A  ++YGQ V+EG KAY+  DG + LFRP+ N  R+     R+ MP     + ++ +KQ+    + W+P     +LYIRP
Sbjct:   22 LGFGKYFTDYMLSYDYDADKGWHDLKIVPYGPIEISPAAQGVHYGQSVFEGLKAYK-RDGEVALFRPEENFKRLNNSLARLEMPQVDEAELLEGLKQLVDIERDWIPEGEGQSLYIRP 138          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: ILVE_STAAS (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain MSSA476) GN=ilvE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.284e-14
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  257 LGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            LGF     DYM +      + +   ++  Y  IE+SP+A  ++YGQ V+EG KAY+  DG + LFRP+ N  R+     R+ MP     + ++ +KQ+    + W+P     +LYIRP
Sbjct:   22 LGFGKYFTDYMLSYDYDADKGWHDLKIVPYGPIEISPAAQGVHYGQSVFEGLKAYK-RDGEVALFRPEENFKRLNNSLARLEMPQVDEAELLEGLKQLVDIERDWIPEGEGQSLYIRP 138          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: ILVE_STAAN (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain N315) GN=ilvE PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.284e-14
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  257 LGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            LGF     DYM +      + +   ++  Y  IE+SP+A  ++YGQ V+EG KAY+  DG + LFRP+ N  R+     R+ MP     + ++ +KQ+    + W+P     +LYIRP
Sbjct:   22 LGFGKYFTDYMLSYDYDADKGWHDLKIVPYGPIEISPAAQGVHYGQSVFEGLKAYK-RDGEVALFRPEENFKRLNNSLARLEMPQVDEAELLEGLKQLVDIERDWIPEGEGQSLYIRP 138          
The following BLAST results are available for this feature:
BLAST of CN185500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
BCAT1_MOUSE8.768e-1634.43Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCA2_YEAST8.768e-1637.84Branched-chain-amino-acid aminotransferase, cytoso... [more]
ILVE_STAAR1.496e-1536.07Probable branched-chain-amino-acid aminotransferas... [more]
BCA1_YEAST9.694e-1535.00Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCAT1_RAT2.821e-1432.79Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCAT1_HUMAN3.684e-1431.97Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCAT_CAEEL4.811e-1431.71Branched-chain-amino-acid aminotransferase, cytoso... [more]
ILVE_STAAW6.284e-1434.75Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_STAAS6.284e-1434.75Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_STAAN6.284e-1434.75Probable branched-chain-amino-acid aminotransferas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185500 ID=CN185500; Name=CN185500; organism=Citrus sinensis; type=EST; length=615bp
GAGGCTCTCTTCTCGGTTATTAACTCTGCCAAAAGGCGTGAACACCGTTG
CAAATAGCAACACAAGAATCATGATTCTAAAGGATGGTGCTGCATGCCTC
CGCAATTTGATCCACTTATTTCGACCTGCTTCTTCTTCTTTGACGTCCAA
GCTTGGAGCTTGCTATTTCTGTACATCTCATGTTGCCTCTCTGCAACAAC
CGGGCAAACCCTCTGTTTTCAGTGATGATGAGTATGCTGATTTGGACTGG
GATAATCTTGGATTTAGTATCAAGCCAGCTGATTATATGTACACCATGAA
ATGTTCTAAACACGAAAATTTCAAACAAGGACAGCTTAGTCGGTACGCAA
ACATTGAGCTAAGCCCTTCAGCAGCAGTCTTAAATTATGGACAGGGAGTG
TACGAAGGAACAAAAGCATACAGGACAGAAGATGGGCGTATTCTTCTCTT
CCGGCCAGATCTAAATGCTTCCCGTATGAAGATAGGTGCCGAGAGGATGT
GCATGCCGTCACCCTCCGTTGATCAGTTTGTCGACGCTGTGAAACAAATA
GCTCTTGCTAACAAGCGTTGGGTTCCTCCTCCAGGAAAAGGCACACTGTA
CATCAGGCCATTGCT
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