CN185484

Overview
NameCN185484
Unique NameCN185484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185484_ssr588 microsatellite CN185484_ssr588:588..597. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2486 contig Csv1_Contig2486:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC3_MAIZE (Pyruvate decarboxylase isozyme 3 (Fragment) OS=Zea mays GN=PDC3 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.712e-75
Identity = 134/163 (82.21%), Postives = 146/163 (89.57%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 493
            PE CGYEFQMQYGSIGWSVGA LGY Q A  KRVIA IGDGSFQVTAQ++ST++RC Q SIIFLINNGGYTIEVEIHDGPYNVIKNW+YTG V+AIHNG GKCWT+KV+SE++LT A++TA GE KD LCFIEV  HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:   41 PEGCGYEFQMQYGSIGWSVGALLGYPQGANHKRVIAFIGDGSFQVTAQDVSTILRCEQNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGFVDAIHNGLGKCWTSKVKSEEDLTAAIETALGE-KDCLCFIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 202          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC2_MAIZE (Pyruvate decarboxylase isozyme 2 (Fragment) OS=Zea mays GN=PDC2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.366e-48
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 2
Query:  176 QRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 493
            Q SIIFLINNGGYTIEVEIHDGPYNVIKNW+YTGLV A HNGEG C+TAKVR+E+ELTEA++ A G +KD LCFIEV VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:    1 QNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVEAFHNGEGACYTAKVRTEEELTEALEAALGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 106          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC3_SCHPO (Probable pyruvate decarboxylase C186.09 OS=Schizosaccharomyces pombe GN=SPAC186.09 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.204e-40
Identity = 82/160 (51.25%), Postives = 102/160 (63.75%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPP 484
            PE   +E +MQ+G IGWSV +  GYA  A  + V+  +GDGSFQ T QE+S M+R     I+FLINN GYTIEVEIHDGPYN IKNWDY  +V A + GEG     +V +  EL EA++ A  E       IE  + +DD SKEL+ WG  V AAN +PP
Sbjct:  411 PEKARFEIEMQWGHIGWSVPSAFGYAIGAPKRNVVVFVGDGSFQETVQEVSQMVRLNLPIIMFLINNRGYTIEVEIHDGPYNRIKNWDYAAIVEAFNAGEGHAKGFRVGNGHELAEAIRQAK-ENSQGPTLIECNIDQDDCSKELINWGHNVGAANGKPP 569          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC_ZYMMO (Pyruvate decarboxylase OS=Zymomonas mobilis GN=pdc PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.186e-38
Identity = 84/166 (50.60%), Postives = 108/166 (65.06%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIH------NGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPP 484
            P     E++MQ+G IGWSV A  GYA  A ++R I  +GDGSFQ+TAQE++ M+R     IIFLINN GYTIEV IHDGPYN IKNWDY GL+   +      +G GK    K ++  EL EA+K A     D    IE F+ ++D ++EL++WG RV+AANSR P
Sbjct:  401 PNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGK--GLKAKTGGELAEAIKVALA-NTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKP 563          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC2_SCHPO (Probable pyruvate decarboxylase C1F8.07c OS=Schizosaccharomyces pombe GN=SPAC1F8.07c PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.729e-38
Identity = 75/160 (46.88%), Postives = 107/160 (66.88%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPP 484
            P    +E +MQ+G IGWSV + +GYA AA ++R I  +GDGSFQ+T QEIS MIR     +IFL+NN GYTIE++IHDGPYN I+NWD+     +++   GK      ++ +ELT A+K A  + K+    IE  +  DD ++EL++WG  V++AN+RPP
Sbjct:  407 PAGAKFEVEMQWGHIGWSVPSAMGYAVAAPERRTIVMVGDGSFQLTGQEISQMIRHKLPVLIFLLNNRGYTIEIQIHDGPYNRIQNWDFAAFCESLNGETGKAKGLHAKTGEELTSAIKVAL-QNKEGPTLIECAIDTDDCTQELVDWGKAVASANARPP 565          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC_NEUCR (Pyruvate decarboxylase OS=Neurospora crassa GN=cfp PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.085e-37
Identity = 80/160 (50.00%), Postives = 100/160 (62.50%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPP 484
            P    +E +MQ+G IGWS+ A  GYA    D+  I  +GDGSFQVTAQE+S M+R      I LINN GYTIEVEIHDG YN IKNWDY  LV A ++ +G        +  EL +A+K A    K+    IE  + +DD SKEL+ WG  V+AAN+RPP
Sbjct:  405 PPGAKFEIEMQWGHIGWSIPAAFGYALRHPDRHTIVLVGDGSFQVTAQEVSQMVRFKVPITIMLINNRGYTIEVEIHDGSYNKIKNWDYAMLVEAFNSTDGHAKGLLANTAGELADAIKVAE-SHKEGPTLIECTIDQDDCSKELITWGHYVAAANARPP 563          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC1_TOBAC (Pyruvate decarboxylase isozyme 1 (Fragment) OS=Nicotiana tabacum GN=PDC1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.341e-32
Identity = 64/71 (90.14%), Postives = 69/71 (97.18%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYT 217
            P+ CGYEFQMQYGSIGWSVGATLGYAQAA +KRVIACIGDGSFQVTAQ+ISTM+RCGQR+IIFLINNGGYT
Sbjct:  348 PKGCGYEFQMQYGSIGWSVGATLGYAQAAPEKRVIACIGDGSFQVTAQDISTMLRCGQRTIIFLINNGGYT 418          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC6_YEAST (Pyruvate decarboxylase isozyme 3 OS=Saccharomyces cerevisiae GN=PDC6 PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 67/158 (42.41%), Postives = 96/158 (60.76%), Query Frame = 2
Query:   29 QMQYGSIGWSVGATLGYAQAAKD----KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGP---YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLC-FIEVFVHKDDTSKELLEWGSRVSAANSR 478
            Q+ +GSIG++ GATLG A AA++    KRVI  IGDGS Q+T QEISTMIR G +  +F++NN GYTIE  IH GP   YN I+ WD+  L+ A   G  K    K+ +  E  +A+ T +  QK+S+   IE+ +   D  + L++     +A N++
Sbjct:  409 QVLWGSIGFTTGATLGAAFAAEEIDPNKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIH-GPHAEYNEIQTWDHLALLPAF--GAKKYENHKIATTGE-WDALTTDSEFQKNSVIRLIELKLPVFDAPESLIKQAQLTAATNAK 562          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC1_YEAST (Pyruvate decarboxylase isozyme 1 OS=Saccharomyces cerevisiae GN=PDC1 PE=1 SV=7)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 64/165 (38.79%), Postives = 91/165 (55.15%), Query Frame = 2
Query:    5 PENCGYEFQMQYGSIGWSVGATLGYAQAAKD----KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGP---YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSR 478
            P N     Q+ +GSIG++ GATLG A AA++    KRVI  IGDGS Q+T QEISTMIR G +  +F++NN GYTIE  IH GP   YN I+ WD+  L+     G     T +V +  E  +  +  +      +  IE+ +   D  + L+E     +A N++
Sbjct:  401 PNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIH-GPKAQYNEIQGWDHLSLLPTF--GAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEIMLPVFDAPQNLVEQAKLTAATNAK 562          
BLAST of CN185484 vs. ExPASy Swiss-Prot
Match: PDC5_YEAST (Pyruvate decarboxylase isozyme 2 OS=Saccharomyces cerevisiae GN=PDC5 PE=1 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 62/157 (39.49%), Postives = 88/157 (56.05%), Query Frame = 2
Query:   29 QMQYGSIGWSVGATLGYAQAAKD----KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGP---YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSR 478
            Q+ +GSIG++VGA LG   AA++    KRVI  IGDGS Q+T QEISTMIR G +  IF++NN GYTIE  IH GP   YN I+ WD+  L+     G     T +V +  E  +  +    +    +  IEV +   D  + L++     +A N++
Sbjct:  409 QVLWGSIGFTVGALLGATMAAEELDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYIFVLNNNGYTIEKLIH-GPHAEYNEIQGWDHLALLPTF--GARNYETHRVATTGEWEKLTQDKDFQDNSKIRMIEVMLPVFDAPQNLVKQAQLTAATNAK 562          
The following BLAST results are available for this feature:
BLAST of CN185484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
PDC3_MAIZE1.712e-7582.21Pyruvate decarboxylase isozyme 3 (Fragment) OS=Zea... [more]
PDC2_MAIZE1.366e-4884.91Pyruvate decarboxylase isozyme 2 (Fragment) OS=Zea... [more]
PDC3_SCHPO5.204e-4051.25Probable pyruvate decarboxylase C186.09 OS=Schizos... [more]
PDC_ZYMMO2.186e-3850.60Pyruvate decarboxylase OS=Zymomonas mobilis GN=pdc... [more]
PDC2_SCHPO3.729e-3846.88Probable pyruvate decarboxylase C1F8.07c OS=Schizo... [more]
PDC_NEUCR1.085e-3750.00Pyruvate decarboxylase OS=Neurospora crassa GN=cfp... [more]
PDC1_TOBAC2.341e-3290.14Pyruvate decarboxylase isozyme 1 (Fragment) OS=Nic... [more]
PDC6_YEAST7.812e-2042.41Pyruvate decarboxylase isozyme 3 OS=Saccharomyces ... [more]
PDC1_YEAST1.020e-1938.79Pyruvate decarboxylase isozyme 1 OS=Saccharomyces ... [more]
PDC5_YEAST2.273e-1939.49Pyruvate decarboxylase isozyme 2 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185484 ID=CN185484; Name=CN185484; organism=Citrus sinensis; type=EST; length=709bp
GCGGCCCGAGAATTGTGGATATGAATTTCAGATGCAGTATGGATCCATTG
GCTGGTCAGTTGGTGCCACCCTAGGATATGCTCAGGCTGCTAAAGATAAG
CGTGTGATTGCTTGCATTGGTGATGGAAGTTTCCAGGTAACTGCTCAGGA
GATATCAACGATGATTCGATGTGGACAAAGGAGCATCATATTCCTTATCA
ACAATGGCGGGTATACAATTGAAGTAGAGATTCATGATGGGCCTTACAAT
GTGATTAAGAACTGGGATTATACTGGCCTGGTAAATGCCATCCACAATGG
AGAAGGAAAATGCTGGACTGCCAAGGTGCGGAGTGAAGATGAACTAACAG
AAGCAATGAAGACAGCTACTGGAGAACAAAAAGATTCTCTATGTTTTATC
GAAGTATTTGTGCACAAGGATGACACCAGCAAAGAGCTGCTGGAGTGGGG
ATCCAGGGTTTCTGCAGCCAACAGCCGCCCTCCAAATCCTCAATAGCACT
TTGAAGTGTTGAGGATTTTGAGTTTCTGTTATTTCAACTGCAGTATTCTT
GGCCTATATCCTAAAACATGTATCAAAGCTAGAAATAAGAGAGAGAGGAT
TGTTTGATTTAGATGGTTTCCCACCTATCTGTTGGCAGCGATCTGGTTTC
TGTTGTGATTATGCATTTGTTGTTATCTGTTGTGATTATGCATTTGTTGT
TATGTACAT
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