DC887897

Overview
NameDC887897
Unique NameDC887897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_GLUOX (60 kDa chaperonin OS=Gluconobacter oxydans GN=groL PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.559e-21
Identity = 51/108 (47.22%), Postives = 76/108 (70.37%), Query Frame = -1
Query:  233 TLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 556
            T DND+++VG +IV++AL  PL+ IA NAG +G+V++ KVL ++ + +G++A  G Y+DL+AAGIIDPTKVVR  L+ A+SV    + ++ +V E   PE   PA  P
Sbjct:  430 TFDNDDQRVGGEIVRKALQAPLRQIAFNAGEDGAVIAGKVLENEGYVFGFDAQKGEYKDLVAAGIIDPTKVVRTALQDAASVGGLLITTEAMVAE--RPEKKAPAAAP 535          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_CAMFF (60 kDa chaperonin OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=groL PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.559e-21
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = -1
Query:  218 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 541
            +E +GA+IVKRAL  PL+ IA+NAG +  VV+  V  +D   YG+NAA+G Y D+  AGIIDP KV R  L++A SVA   L ++  V EIKE +PAMP   PM + G
Sbjct:  432 DELIGAEIVKRALFAPLRQIAENAGFDAGVVANSVSCADCPNYGFNAASGEYVDMFEAGIIDPVKVERIALQNAVSVASLLLTTEATVSEIKEDKPAMP---PMPDMG 536          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_BACTN (60 kDa chaperonin OS=Bacteroides thetaiotaomicron GN=groL PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.559e-21
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = -1
Query:  233 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 550
            DN +E  G  I+KRA+  PL+ I  NAG  G+VV +KV       +GYNA T  YE+L AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  432 DNADETTGIGIIKRAIEEPLREIVANAGKEGAVVVQKVREGKGD-FGYNARTDVYENLHAAGVVDPAKVARVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH601_NITWN (60 kDa chaperonin 1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.559e-21
Identity = 50/110 (45.45%), Postives = 74/110 (67.27%), Query Frame = -1
Query:  227 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 550
            DN ++K G DIV+RA+  P + I +NAG +GS+V  K+L  + + +G+NAATG Y+DL+  G+IDP KVVR  L+ A+SVA   + ++ +V E   K+  PA+P G  MD
Sbjct:  432 DNPDQKAGVDIVRRAIQVPARQIIQNAGEDGSLVVGKLLEKNTYNWGFNAATGEYQDLVGVGVIDPAKVVRTALQDAASVASLLITTEALVAEKPKKDVAPALPPGGGMD 541          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_GRABC (60 kDa chaperonin OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=groL PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.037e-21
Identity = 49/111 (44.14%), Postives = 78/111 (70.27%), Query Frame = -1
Query:  218 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 550
            DN ++KVG +I++RAL  PL+ I++NAG +G+V++ KVL +  + +G++A TG ++DL++AGIIDP KVVR  L+ A+SVA   + ++ ++ E  +PE   PAG P    G
Sbjct:  432 DNGDQKVGIEIIRRALQSPLRQISENAGEDGAVIAGKVLENGTYNFGFDAQTGEFKDLVSAGIIDPAKVVRTALQDAASVAALLITTEAMIAE--KPEKKAPAGAPPGGMG 540          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_ARCB4 (60 kDa chaperonin OS=Arcobacter butzleri (strain RM4018) GN=groL PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.037e-21
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = -1
Query:  218 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 541
            +E++GADIV RA+  PLK IA NAG +  VV+ +V  S N   G+NAATG Y D+  AGI+DP KV R  +++A SVA   L ++  V +IKE +PAMP+   M   G
Sbjct:  432 DERIGADIVLRAISAPLKQIAINAGFDAGVVANEVEKSSNENLGFNAATGEYVDMFEAGIVDPAKVERVAMQNAVSVASLLLTTEATVSDIKEDKPAMPSMPDMGGMG 539          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_ROSDO (60 kDa chaperonin 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.037e-21
Identity = 52/115 (45.22%), Postives = 75/115 (65.22%), Query Frame = -1
Query:  212 TLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 556
            T DN+++ VG  IV++AL  PL+ IA+NAGV+GSVV+ K+  SD+ K+G+NA T  Y D+ A G+IDP KVVR  L+ A+S+A   + ++ +V +    E A P G   D  G G
Sbjct:  430 TGDNNDQNVGISIVRKALEAPLRQIAENAGVDGSVVAGKIRESDDLKFGFNAQTEEYGDMFAFGVIDPAKVVRTALQDAASIAGLLITTEAMVADRPAKEGAAPGGGMPDMGGMG 544          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_WOLSU (60 kDa chaperonin OS=Wolinella succinogenes GN=groL PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.660e-21
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = -1
Query:  218 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 541
            +EK+G +I+KRA+  PLK IA+NAG +  VV+  V  + N  +G+NAA G Y D+ A GIIDP KV R  L++A SV+   L ++  + EIKE +PAMP  + M   G
Sbjct:  433 DEKIGYEIIKRAISAPLKQIAQNAGFDAGVVANNVEQNGNENFGFNAANGEYVDMFAEGIIDPLKVARIALQNAVSVSSLLLTTEATISEIKEDKPAMPDMSGMGGMG 540          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_PARD8 (60 kDa chaperonin OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=groL PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.660e-21
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = -1
Query:  212 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 550
            DN++E  G +IVKRA+  PL+ I  NAG  G+V+ +KV       +GYNA    +E+L  AG+IDP KV R  LE+A+S+A  FL ++CV+ E KE  PAMP  NP    G G
Sbjct:  432 DNEDETTGIEIVKRAIEEPLRQIVANAGKEGAVIVQKVKEGKGD-FGYNARKDCFENLCEAGVIDPAKVTRVALENAASIAGMFLTTECVIAEKKEETPAMPPMNPGMGGGMG 543          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.474e-21
Identity = 53/111 (47.75%), Postives = 77/111 (69.37%), Query Frame = -1
Query:  233 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 565
            IKE L++ +E++GADIV++AL  P  LIA+NAG+ G VV EK++ S+  + GYNA T  YE+L+ AG+IDP KV R  L++A+SVA   L +  +VV+  +P+P  P   P
Sbjct:  433 IKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSE-WEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPTAAP 540          
The following BLAST results are available for this feature:
BLAST of DC887897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_GLUOX1.559e-2147.2260 kDa chaperonin OS=Gluconobacter oxydans GN=groL... [more]
CH60_CAMFF1.559e-2150.9360 kDa chaperonin OS=Campylobacter fetus subsp. fe... [more]
CH60_BACTN1.559e-2150.0060 kDa chaperonin OS=Bacteroides thetaiotaomicron ... [more]
CH601_NITWN1.559e-2145.4560 kDa chaperonin 1 OS=Nitrobacter winogradskyi (s... [more]
CH60_GRABC2.037e-2144.1460 kDa chaperonin OS=Granulibacter bethesdensis (s... [more]
CH60_ARCB42.037e-2148.1560 kDa chaperonin OS=Arcobacter butzleri (strain R... [more]
CH602_ROSDO2.037e-2145.2260 kDa chaperonin 2 OS=Roseobacter denitrificans (... [more]
CH60_WOLSU2.660e-2146.3060 kDa chaperonin OS=Wolinella succinogenes GN=gro... [more]
CH60_PARD82.660e-2146.9060 kDa chaperonin OS=Parabacteroides distasonis (s... [more]
RUB1_BRANA3.474e-2147.75RuBisCO large subunit-binding protein subunit alph... [more]

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Properties
Property NameValue
Genbank descriptionDC887897 EIC Citrus sinensis cDNA clone EIC1072 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887897 ID=DC887897; Name=DC887897; organism=Citrus sinensis; type=EST; length=565bp
AGAAATCATTGCAATTGTACATCTAATTGCAAATTAATACGAGCCGTACT
CTGGCAAGCTATCCTCACCAGAATCCATAAACTCTACTAAGTCNAGTAAT
TGAATTTACAAGAAGAAGAGAACCCAACGCTGTCAAACTGAAAGATAGTT
GCTATAACGAANTCAGAACCTTATTTGCTTGCCTCCCGTGACCTTGTTAA
TTAGCTTAGTATCCATATCCTGAGTTGTCCATAGGGTTACCCGCAGGCAT
AGCGGGTTCAGGCTCCTTGATCTCAACCACCACACAGTCGGACATCAAGA
AGGTTTTTGCCACCGAGGAAGCATGCTCCAAGCANCATCTAACCACCTTG
GTAGGATCAATAATTCCTGCAGCCATTAGATCTTCGTAGTTTCCAGTTGC
AGCATTGTATCCATATTTATGATTGTCACTTGAAAGCACCTTCTCGCTGA
CCACACTTCCATTAACACCGGCATTTTTGGCAATTAATTTCAGTGGGTAG
CACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTATC
AAGGGTTTCCTTAAT
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