DC887897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_GLUOX (60 kDa chaperonin OS=Gluconobacter oxydans GN=groL PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.559e-21 Identity = 51/108 (47.22%), Postives = 76/108 (70.37%), Query Frame = -1 Query: 233 TLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 556 T DND+++VG +IV++AL PL+ IA NAG +G+V++ KVL ++ + +G++A G Y+DL+AAGIIDPTKVVR L+ A+SV + ++ +V E PE PA P Sbjct: 430 TFDNDDQRVGGEIVRKALQAPLRQIAFNAGEDGAVIAGKVLENEGYVFGFDAQKGEYKDLVAAGIIDPTKVVRTALQDAASVGGLLITTEAMVAE--RPEKKAPAAAP 535
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_CAMFF (60 kDa chaperonin OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=groL PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.559e-21 Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = -1 Query: 218 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 541 +E +GA+IVKRAL PL+ IA+NAG + VV+ V +D YG+NAA+G Y D+ AGIIDP KV R L++A SVA L ++ V EIKE +PAMP PM + G Sbjct: 432 DELIGAEIVKRALFAPLRQIAENAGFDAGVVANSVSCADCPNYGFNAASGEYVDMFEAGIIDPVKVERIALQNAVSVASLLLTTEATVSEIKEDKPAMP---PMPDMG 536
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_BACTN (60 kDa chaperonin OS=Bacteroides thetaiotaomicron GN=groL PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.559e-21 Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = -1 Query: 233 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 550 DN +E G I+KRA+ PL+ I NAG G+VV +KV +GYNA T YE+L AAG++DP KV R LE+A+S+A FL ++CV+VE KE +P MP G P Sbjct: 432 DNADETTGIGIIKRAIEEPLREIVANAGKEGAVVVQKVREGKGD-FGYNARTDVYENLHAAGVVDPAKVARVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH601_NITWN (60 kDa chaperonin 1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL1 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.559e-21 Identity = 50/110 (45.45%), Postives = 74/110 (67.27%), Query Frame = -1 Query: 227 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 550 DN ++K G DIV+RA+ P + I +NAG +GS+V K+L + + +G+NAATG Y+DL+ G+IDP KVVR L+ A+SVA + ++ +V E K+ PA+P G MD Sbjct: 432 DNPDQKAGVDIVRRAIQVPARQIIQNAGEDGSLVVGKLLEKNTYNWGFNAATGEYQDLVGVGVIDPAKVVRTALQDAASVASLLITTEALVAEKPKKDVAPALPPGGGMD 541
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_GRABC (60 kDa chaperonin OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=groL PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.037e-21 Identity = 49/111 (44.14%), Postives = 78/111 (70.27%), Query Frame = -1 Query: 218 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 550 DN ++KVG +I++RAL PL+ I++NAG +G+V++ KVL + + +G++A TG ++DL++AGIIDP KVVR L+ A+SVA + ++ ++ E +PE PAG P G Sbjct: 432 DNGDQKVGIEIIRRALQSPLRQISENAGEDGAVIAGKVLENGTYNFGFDAQTGEFKDLVSAGIIDPAKVVRTALQDAASVAALLITTEAMIAE--KPEKKAPAGAPPGGMG 540
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_ARCB4 (60 kDa chaperonin OS=Arcobacter butzleri (strain RM4018) GN=groL PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.037e-21 Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = -1 Query: 218 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 541 +E++GADIV RA+ PLK IA NAG + VV+ +V S N G+NAATG Y D+ AGI+DP KV R +++A SVA L ++ V +IKE +PAMP+ M G Sbjct: 432 DERIGADIVLRAISAPLKQIAINAGFDAGVVANEVEKSSNENLGFNAATGEYVDMFEAGIVDPAKVERVAMQNAVSVASLLLTTEATVSDIKEDKPAMPSMPDMGGMG 539
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_ROSDO (60 kDa chaperonin 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL2 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.037e-21 Identity = 52/115 (45.22%), Postives = 75/115 (65.22%), Query Frame = -1 Query: 212 TLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 556 T DN+++ VG IV++AL PL+ IA+NAGV+GSVV+ K+ SD+ K+G+NA T Y D+ A G+IDP KVVR L+ A+S+A + ++ +V + E A P G D G G Sbjct: 430 TGDNNDQNVGISIVRKALEAPLRQIAENAGVDGSVVAGKIRESDDLKFGFNAQTEEYGDMFAFGVIDPAKVVRTALQDAASIAGLLITTEAMVADRPAKEGAAPGGGMPDMGGMG 544
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_WOLSU (60 kDa chaperonin OS=Wolinella succinogenes GN=groL PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.660e-21 Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = -1 Query: 218 EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 541 +EK+G +I+KRA+ PLK IA+NAG + VV+ V + N +G+NAA G Y D+ A GIIDP KV R L++A SV+ L ++ + EIKE +PAMP + M G Sbjct: 433 DEKIGYEIIKRAISAPLKQIAQNAGFDAGVVANNVEQNGNENFGFNAANGEYVDMFAEGIIDPLKVARIALQNAVSVSSLLLTTEATISEIKEDKPAMPDMSGMGGMG 540
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_PARD8 (60 kDa chaperonin OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=groL PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.660e-21 Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = -1 Query: 212 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 550 DN++E G +IVKRA+ PL+ I NAG G+V+ +KV +GYNA +E+L AG+IDP KV R LE+A+S+A FL ++CV+ E KE PAMP NP G G Sbjct: 432 DNEDETTGIEIVKRAIEEPLRQIVANAGKEGAVIVQKVKEGKGD-FGYNARKDCFENLCEAGVIDPAKVTRVALENAASIAGMFLTTECVIAEKKEETPAMPPMNPGMGGGMG 543
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 3.474e-21 Identity = 53/111 (47.75%), Postives = 77/111 (69.37%), Query Frame = -1 Query: 233 IKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 565 IKE L++ +E++GADIV++AL P LIA+NAG+ G VV EK++ S+ + GYNA T YE+L+ AG+IDP KV R L++A+SVA L + +VV+ +P+P P P Sbjct: 433 IKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSE-WEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPTAAP 540 The following BLAST results are available for this feature:
BLAST of DC887897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887897 ID=DC887897; Name=DC887897; organism=Citrus sinensis; type=EST; length=565bpback to top |